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SDK2 (sidekick cell adhesion molecule 2)

Identity

Alias_namessidekick homolog 2 (chicken)
Alias_symbol (synonym)FLJ10832
KIAA1514
Other alias-
HGNC (Hugo) SDK2
LocusID (NCBI) 54549
Atlas_Id 73072
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 73334384 and ends at 73644088 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDC42EP4 (17q25.1) / SDK2 (17q25.1)MIF4GD (17q25.1) / SDK2 (17q25.1)RAPGEF5 (7p15.3) / SDK2 (17q25.1)
SDK2 (17q25.1) / SDK2 (17q25.1)SLC39A11 (17q24.3) / SDK2 (17q25.1)TEX14 (17q22) / SDK2 (17q25.1)
CDC42EP4 SDK2TEX14 SDK2SLC39A11 SDK2
MIF4GD SDK2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDK2   19308
Cards
Entrez_Gene (NCBI)SDK2  54549  sidekick cell adhesion molecule 2
Aliases
GeneCards (Weizmann)SDK2
Ensembl hg19 (Hinxton)ENSG00000069188 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000069188 [Gene_View]  chr17:73334384-73644088 [Contig_View]  SDK2 [Vega]
ICGC DataPortalENSG00000069188
TCGA cBioPortalSDK2
AceView (NCBI)SDK2
Genatlas (Paris)SDK2
WikiGenes54549
SOURCE (Princeton)SDK2
Genetics Home Reference (NIH)SDK2
Genomic and cartography
GoldenPath hg38 (UCSC)SDK2  -     chr17:73334384-73644088 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDK2  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblSDK2 - 17q25.1 [CytoView hg19]  SDK2 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBISDK2 [Mapview hg19]  SDK2 [Mapview hg38]
OMIM607217   
Gene and transcription
Genbank (Entrez)AB040947 AK001694 AK074994 AK091827 AL137357
RefSeq transcript (Entrez)NM_001144952 NM_019064
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SDK2
Cluster EST : UnigeneHs.435719 [ NCBI ]
CGAP (NCI)Hs.435719
Alternative Splicing GalleryENSG00000069188
Gene ExpressionSDK2 [ NCBI-GEO ]   SDK2 [ EBI - ARRAY_EXPRESS ]   SDK2 [ SEEK ]   SDK2 [ MEM ]
Gene Expression Viewer (FireBrowse)SDK2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54549
GTEX Portal (Tissue expression)SDK2
Human Protein AtlasENSG00000069188-SDK2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ58EX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ58EX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ58EX2
Splice isoforms : SwissVarQ58EX2
PhosPhoSitePlusQ58EX2
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)SDK2
DMDM Disease mutations54549
Blocks (Seattle)SDK2
PDB (SRS)1WF5    1WFN    1WFO    1WIS   
PDB (PDBSum)1WF5    1WFN    1WFO    1WIS   
PDB (IMB)1WF5    1WFN    1WFO    1WIS   
PDB (RSDB)1WF5    1WFN    1WFO    1WIS   
Structural Biology KnowledgeBase1WF5    1WFN    1WFO    1WIS   
SCOP (Structural Classification of Proteins)1WF5    1WFN    1WFO    1WIS   
CATH (Classification of proteins structures)1WF5    1WFN    1WFO    1WIS   
SuperfamilyQ58EX2
Human Protein Atlas [tissue]ENSG00000069188-SDK2 [tissue]
Peptide AtlasQ58EX2
HPRD06239
IPIIPI00942929   IPI00871145   IPI00384376   IPI00963847   IPI00902760   IPI00478949   IPI00917480   
Protein Interaction databases
DIP (DOE-UCLA)Q58EX2
IntAct (EBI)Q58EX2
FunCoupENSG00000069188
BioGRIDSDK2
STRING (EMBL)SDK2
ZODIACSDK2
Ontologies - Pathways
QuickGOQ58EX2
Ontology : AmiGOplasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  synapse assembly  retina layer formation  integral component of membrane  cell junction  synapse  camera-type eye photoreceptor cell differentiation  
Ontology : EGO-EBIplasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  synapse assembly  retina layer formation  integral component of membrane  cell junction  synapse  camera-type eye photoreceptor cell differentiation  
NDEx NetworkSDK2
Atlas of Cancer Signalling NetworkSDK2
Wikipedia pathwaysSDK2
Orthology - Evolution
OrthoDB54549
GeneTree (enSembl)ENSG00000069188
Phylogenetic Trees/Animal Genes : TreeFamSDK2
HOVERGENQ58EX2
HOGENOMQ58EX2
Homologs : HomoloGeneSDK2
Homology/Alignments : Family Browser (UCSC)SDK2
Gene fusions - Rearrangements
Fusion: TCGACDC42EP4 SDK2
Fusion: TCGATEX14 SDK2
Fusion: TCGASLC39A11 SDK2
Fusion: TCGAMIF4GD SDK2
Fusion: Tumor Portal SDK2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDK2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDK2
dbVarSDK2
ClinVarSDK2
1000_GenomesSDK2 
Exome Variant ServerSDK2
ExAC (Exome Aggregation Consortium)ENSG00000069188
GNOMAD BrowserENSG00000069188
Genetic variants : HAPMAP54549
Genomic Variants (DGV)SDK2 [DGVbeta]
DECIPHERSDK2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDK2 
Mutations
ICGC Data PortalSDK2 
TCGA Data PortalSDK2 
Broad Tumor PortalSDK2
OASIS PortalSDK2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDK2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSDK2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SDK2
DgiDB (Drug Gene Interaction Database)SDK2
DoCM (Curated mutations)SDK2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDK2 (select a term)
intoGenSDK2
Cancer3DSDK2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607217   
Orphanet
MedgenSDK2
Genetic Testing Registry SDK2
NextProtQ58EX2 [Medical]
TSGene54549
GENETestsSDK2
Target ValidationSDK2
Huge Navigator SDK2 [HugePedia]
snp3D : Map Gene to Disease54549
BioCentury BCIQSDK2
ClinGenSDK2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54549
Chemical/Pharm GKB GenePA134981456
Clinical trialSDK2
Miscellaneous
canSAR (ICR)SDK2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDK2
EVEXSDK2
GoPubMedSDK2
iHOPSDK2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:26:37 CET 2017

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