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SDPR (serum deprivation response)

Identity

Alias_namesserum deprivation response (phosphatidylserine-binding protein)
serum deprivation response (phosphatidylserine binding protein)
Alias_symbol (synonym)SDR
PS-p68
cavin-2
CAVIN2
Other alias
HGNC (Hugo) SDPR
LocusID (NCBI) 8436
Atlas_Id 52760
Location 2q32.3  [Link to chromosome band 2q32]
Location_base_pair Starts at 192699032 and ends at 192712006 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SDPR (2q32.3) / TMEFF2 (2q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDPR   10690
Cards
Entrez_Gene (NCBI)SDPR  8436  serum deprivation response
AliasesCAVIN2; PS-p68; SDR; cavin-2
GeneCards (Weizmann)SDPR
Ensembl hg19 (Hinxton)ENSG00000168497 [Gene_View]  chr2:192699032-192712006 [Contig_View]  SDPR [Vega]
Ensembl hg38 (Hinxton)ENSG00000168497 [Gene_View]  chr2:192699032-192712006 [Contig_View]  SDPR [Vega]
ICGC DataPortalENSG00000168497
TCGA cBioPortalSDPR
AceView (NCBI)SDPR
Genatlas (Paris)SDPR
WikiGenes8436
SOURCE (Princeton)SDPR
Genetics Home Reference (NIH)SDPR
Genomic and cartography
GoldenPath hg19 (UCSC)SDPR  -     chr2:192699032-192712006 -  2q32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SDPR  -     2q32.3   [Description]    (hg38-Dec_2013)
EnsemblSDPR - 2q32.3 [CytoView hg19]  SDPR - 2q32.3 [CytoView hg38]
Mapping of homologs : NCBISDPR [Mapview hg19]  SDPR [Mapview hg38]
OMIM606728   
Gene and transcription
Genbank (Entrez)AF085481 AK026943 AK290378 AK311055 BC016475
RefSeq transcript (Entrez)NM_004657
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)SDPR
Cluster EST : UnigeneHs.26530 [ NCBI ]
CGAP (NCI)Hs.26530
Alternative Splicing GalleryENSG00000168497
Gene ExpressionSDPR [ NCBI-GEO ]   SDPR [ EBI - ARRAY_EXPRESS ]   SDPR [ SEEK ]   SDPR [ MEM ]
Gene Expression Viewer (FireBrowse)SDPR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8436
GTEX Portal (Tissue expression)SDPR
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95810   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95810  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95810
Splice isoforms : SwissVarO95810
PhosPhoSitePlusO95810
Domains : Interpro (EBI)Cavin_fam   
Domain families : Pfam (Sanger)PTRF_SDPR (PF15237)   
Domain families : Pfam (NCBI)pfam15237   
Conserved Domain (NCBI)SDPR
DMDM Disease mutations8436
Blocks (Seattle)SDPR
SuperfamilyO95810
Human Protein AtlasENSG00000168497
Peptide AtlasO95810
HPRD09470
IPIIPI00005809   
Protein Interaction databases
DIP (DOE-UCLA)O95810
IntAct (EBI)O95810
FunCoupENSG00000168497
BioGRIDSDPR
STRING (EMBL)SDPR
ZODIACSDPR
Ontologies - Pathways
QuickGOO95810
Ontology : AmiGOphosphatidylserine binding  protein kinase C binding  protein binding  phospholipid binding  cytoplasm  cytosol  caveola  membrane raft  
Ontology : EGO-EBIphosphatidylserine binding  protein kinase C binding  protein binding  phospholipid binding  cytoplasm  cytosol  caveola  membrane raft  
NDEx NetworkSDPR
Atlas of Cancer Signalling NetworkSDPR
Wikipedia pathwaysSDPR
Orthology - Evolution
OrthoDB8436
GeneTree (enSembl)ENSG00000168497
Phylogenetic Trees/Animal Genes : TreeFamSDPR
HOVERGENO95810
HOGENOMO95810
Homologs : HomoloGeneSDPR
Homology/Alignments : Family Browser (UCSC)SDPR
Gene fusions - Rearrangements
Fusion Cancer (Beijing)SDPR [2q32.3]  -  TMEFF2 [2q32.3]  [FUSC001633]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDPR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDPR
dbVarSDPR
ClinVarSDPR
1000_GenomesSDPR 
Exome Variant ServerSDPR
ExAC (Exome Aggregation Consortium)SDPR (select the gene name)
Genetic variants : HAPMAP8436
Genomic Variants (DGV)SDPR [DGVbeta]
DECIPHER (Syndromes)2:192699032-192712006  ENSG00000168497
CONAN: Copy Number AnalysisSDPR 
Mutations
ICGC Data PortalSDPR 
TCGA Data PortalSDPR 
Broad Tumor PortalSDPR
OASIS PortalSDPR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDPR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSDPR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SDPR
DgiDB (Drug Gene Interaction Database)SDPR
DoCM (Curated mutations)SDPR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDPR (select a term)
intoGenSDPR
Cancer3DSDPR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606728   
Orphanet
MedgenSDPR
Genetic Testing Registry SDPR
NextProtO95810 [Medical]
TSGene8436
GENETestsSDPR
Huge Navigator SDPR [HugePedia]
snp3D : Map Gene to Disease8436
BioCentury BCIQSDPR
ClinGenSDPR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8436
Chemical/Pharm GKB GenePA35615
Clinical trialSDPR
Miscellaneous
canSAR (ICR)SDPR (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDPR
EVEXSDPR
GoPubMedSDPR
iHOPSDPR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:18:37 CEST 2017

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