Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SDR39U1 (short chain dehydrogenase/reductase family 39U member 1)

Identity

Alias_namesC14orf124
chromosome 14 open reading frame 124
Alias_symbol (synonym)HCDI
Other alias
HGNC (Hugo) SDR39U1
LocusID (NCBI) 56948
Atlas_Id 73074
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24439766 and ends at 24442905 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDR39U1   20275
Cards
Entrez_Gene (NCBI)SDR39U1  56948  short chain dehydrogenase/reductase family 39U member 1
AliasesC14orf124; HCDI
GeneCards (Weizmann)SDR39U1
Ensembl hg19 (Hinxton)ENSG00000100445 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100445 [Gene_View]  chr14:24439766-24442905 [Contig_View]  SDR39U1 [Vega]
ICGC DataPortalENSG00000100445
TCGA cBioPortalSDR39U1
AceView (NCBI)SDR39U1
Genatlas (Paris)SDR39U1
WikiGenes56948
SOURCE (Princeton)SDR39U1
Genetics Home Reference (NIH)SDR39U1
Genomic and cartography
GoldenPath hg38 (UCSC)SDR39U1  -     chr14:24439766-24442905 -  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDR39U1  -     14q12   [Description]    (hg19-Feb_2009)
EnsemblSDR39U1 - 14q12 [CytoView hg19]  SDR39U1 - 14q12 [CytoView hg38]
Mapping of homologs : NCBISDR39U1 [Mapview hg19]  SDR39U1 [Mapview hg38]
OMIM616162   
Gene and transcription
Genbank (Entrez)AF226050 AK123513 BC000989 BC008566 BI256676
RefSeq transcript (Entrez)NM_001290292 NM_001290293 NM_001308075 NM_020195
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SDR39U1
Cluster EST : UnigeneHs.643552 [ NCBI ]
CGAP (NCI)Hs.643552
Alternative Splicing GalleryENSG00000100445
Gene ExpressionSDR39U1 [ NCBI-GEO ]   SDR39U1 [ EBI - ARRAY_EXPRESS ]   SDR39U1 [ SEEK ]   SDR39U1 [ MEM ]
Gene Expression Viewer (FireBrowse)SDR39U1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56948
GTEX Portal (Tissue expression)SDR39U1
Human Protein AtlasENSG00000100445-SDR39U1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRG7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRG7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRG7
Splice isoforms : SwissVarQ9NRG7
Catalytic activity : Enzyme1.1.1.- [ Enzyme-Expasy ]   1.1.1.-1.1.1.- [ IntEnz-EBI ]   1.1.1.- [ BRENDA ]   1.1.1.- [ KEGG ]   
PhosPhoSitePlusQ9NRG7
Domains : Interpro (EBI)DUF1731    NAD(P)-bd_dom    SDR39U1   
Domain families : Pfam (Sanger)DUF1731 (PF08338)   
Domain families : Pfam (NCBI)pfam08338   
Conserved Domain (NCBI)SDR39U1
DMDM Disease mutations56948
Blocks (Seattle)SDR39U1
PDB (SRS)4B4O   
PDB (PDBSum)4B4O   
PDB (IMB)4B4O   
PDB (RSDB)4B4O   
Structural Biology KnowledgeBase4B4O   
SCOP (Structural Classification of Proteins)4B4O   
CATH (Classification of proteins structures)4B4O   
SuperfamilyQ9NRG7
Human Protein Atlas [tissue]ENSG00000100445-SDR39U1 [tissue]
Peptide AtlasQ9NRG7
HPRD16598
IPIIPI00829615   IPI00643286   IPI00829668   IPI01011217   IPI01025599   IPI01025230   IPI01024998   IPI01025118   IPI01024714   IPI01024829   IPI01026372   IPI01026047   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRG7
IntAct (EBI)Q9NRG7
FunCoupENSG00000100445
BioGRIDSDR39U1
STRING (EMBL)SDR39U1
ZODIACSDR39U1
Ontologies - Pathways
QuickGOQ9NRG7
Ontology : AmiGOnucleus  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBInucleus  oxidoreductase activity  oxidation-reduction process  
NDEx NetworkSDR39U1
Atlas of Cancer Signalling NetworkSDR39U1
Wikipedia pathwaysSDR39U1
Orthology - Evolution
OrthoDB56948
GeneTree (enSembl)ENSG00000100445
Phylogenetic Trees/Animal Genes : TreeFamSDR39U1
HOVERGENQ9NRG7
HOGENOMQ9NRG7
Homologs : HomoloGeneSDR39U1
Homology/Alignments : Family Browser (UCSC)SDR39U1
Gene fusions - Rearrangements
Tumor Fusion PortalSDR39U1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDR39U1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDR39U1
dbVarSDR39U1
ClinVarSDR39U1
1000_GenomesSDR39U1 
Exome Variant ServerSDR39U1
ExAC (Exome Aggregation Consortium)ENSG00000100445
GNOMAD BrowserENSG00000100445
Genetic variants : HAPMAP56948
Genomic Variants (DGV)SDR39U1 [DGVbeta]
DECIPHERSDR39U1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDR39U1 
Mutations
ICGC Data PortalSDR39U1 
TCGA Data PortalSDR39U1 
Broad Tumor PortalSDR39U1
OASIS PortalSDR39U1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDR39U1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSDR39U1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SDR39U1
DgiDB (Drug Gene Interaction Database)SDR39U1
DoCM (Curated mutations)SDR39U1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDR39U1 (select a term)
intoGenSDR39U1
Cancer3DSDR39U1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616162   
Orphanet
DisGeNETSDR39U1
MedgenSDR39U1
Genetic Testing Registry SDR39U1
NextProtQ9NRG7 [Medical]
TSGene56948
GENETestsSDR39U1
Target ValidationSDR39U1
Huge Navigator SDR39U1 [HugePedia]
snp3D : Map Gene to Disease56948
BioCentury BCIQSDR39U1
ClinGenSDR39U1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56948
Chemical/Pharm GKB GenePA164725619
Clinical trialSDR39U1
Miscellaneous
canSAR (ICR)SDR39U1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDR39U1
EVEXSDR39U1
GoPubMedSDR39U1
iHOPSDR39U1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:11:31 CET 2017

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