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SDR42E1 (short chain dehydrogenase/reductase family 42E, member 1)

Identity

Alias_symbol (synonym)HSPC105
Other alias
HGNC (Hugo) SDR42E1
LocusID (NCBI) 93517
Atlas_Id 73075
Location 16q23.3  [Link to chromosome band 16q23]
Location_base_pair Starts at 81997646 and ends at 82011488 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDR42E1   29834
Cards
Entrez_Gene (NCBI)SDR42E1  93517  short chain dehydrogenase/reductase family 42E, member 1
AliasesHSPC105
GeneCards (Weizmann)SDR42E1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:81997646-82011488 [Contig_View]  SDR42E1 [Vega]
TCGA cBioPortalSDR42E1
AceView (NCBI)SDR42E1
Genatlas (Paris)SDR42E1
WikiGenes93517
SOURCE (Princeton)SDR42E1
Genetics Home Reference (NIH)SDR42E1
Genomic and cartography
GoldenPath hg38 (UCSC)SDR42E1  -     chr16:81997646-82011488 -  16q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDR42E1  -     16q23.3   [Description]    (hg19-Feb_2009)
EnsemblSDR42E1 - 16q23.3 [CytoView hg19]  SDR42E1 - 16q23.3 [CytoView hg38]
Mapping of homologs : NCBISDR42E1 [Mapview hg19]  SDR42E1 [Mapview hg38]
OMIM616164   
Gene and transcription
Genbank (Entrez)AF161368 AK026740 AK315652 BC019670 BX482154
RefSeq transcript (Entrez)NM_145168
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SDR42E1
Cluster EST : UnigeneHs.87779 [ NCBI ]
CGAP (NCI)Hs.87779
Gene ExpressionSDR42E1 [ NCBI-GEO ]   SDR42E1 [ EBI - ARRAY_EXPRESS ]   SDR42E1 [ SEEK ]   SDR42E1 [ MEM ]
Gene Expression Viewer (FireBrowse)SDR42E1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93517
GTEX Portal (Tissue expression)SDR42E1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUS8
Splice isoforms : SwissVarQ8WUS8
PhosPhoSitePlusQ8WUS8
Domains : Interpro (EBI)3Beta_OHSteriod_DH/Estase    NAD(P)-bd_dom   
Domain families : Pfam (Sanger)3Beta_HSD (PF01073)   
Domain families : Pfam (NCBI)pfam01073   
Conserved Domain (NCBI)SDR42E1
DMDM Disease mutations93517
Blocks (Seattle)SDR42E1
SuperfamilyQ8WUS8
Peptide AtlasQ8WUS8
HPRD17118
IPIIPI00163504   IPI00981574   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUS8
IntAct (EBI)Q8WUS8
BioGRIDSDR42E1
STRING (EMBL)SDR42E1
ZODIACSDR42E1
Ontologies - Pathways
QuickGOQ8WUS8
Ontology : AmiGO3-beta-hydroxy-delta5-steroid dehydrogenase activity  steroid biosynthetic process  integral component of membrane  oxidation-reduction process  
Ontology : EGO-EBI3-beta-hydroxy-delta5-steroid dehydrogenase activity  steroid biosynthetic process  integral component of membrane  oxidation-reduction process  
NDEx NetworkSDR42E1
Atlas of Cancer Signalling NetworkSDR42E1
Wikipedia pathwaysSDR42E1
Orthology - Evolution
OrthoDB93517
Phylogenetic Trees/Animal Genes : TreeFamSDR42E1
HOVERGENQ8WUS8
HOGENOMQ8WUS8
Homologs : HomoloGeneSDR42E1
Homology/Alignments : Family Browser (UCSC)SDR42E1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDR42E1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDR42E1
dbVarSDR42E1
ClinVarSDR42E1
1000_GenomesSDR42E1 
Exome Variant ServerSDR42E1
ExAC (Exome Aggregation Consortium)SDR42E1 (select the gene name)
Genetic variants : HAPMAP93517
Genomic Variants (DGV)SDR42E1 [DGVbeta]
DECIPHERSDR42E1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDR42E1 
Mutations
ICGC Data PortalSDR42E1 
TCGA Data PortalSDR42E1 
Broad Tumor PortalSDR42E1
OASIS PortalSDR42E1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDR42E1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSDR42E1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SDR42E1
DgiDB (Drug Gene Interaction Database)SDR42E1
DoCM (Curated mutations)SDR42E1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDR42E1 (select a term)
intoGenSDR42E1
Cancer3DSDR42E1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616164   
Orphanet
MedgenSDR42E1
Genetic Testing Registry SDR42E1
NextProtQ8WUS8 [Medical]
TSGene93517
GENETestsSDR42E1
Target ValidationSDR42E1
Huge Navigator SDR42E1 [HugePedia]
snp3D : Map Gene to Disease93517
BioCentury BCIQSDR42E1
ClinGenSDR42E1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93517
Chemical/Pharm GKB GenePA164725636
Clinical trialSDR42E1
Miscellaneous
canSAR (ICR)SDR42E1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDR42E1
EVEXSDR42E1
GoPubMedSDR42E1
iHOPSDR42E1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:25 CEST 2017

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