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SDR9C7 (short chain dehydrogenase/reductase family 9C member 7)

Identity

Alias_symbol (synonym)SDR-O
RDHS
Other aliasSDRO
HGNC (Hugo) SDR9C7
LocusID (NCBI) 121214
Atlas_Id 53488
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 56923154 and ends at 56934405 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SDR9C7   29958
Cards
Entrez_Gene (NCBI)SDR9C7  121214  short chain dehydrogenase/reductase family 9C member 7
AliasesRDHS; SDR-O; SDRO
GeneCards (Weizmann)SDR9C7
Ensembl hg19 (Hinxton)ENSG00000170426 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170426 [Gene_View]  chr12:56923154-56934405 [Contig_View]  SDR9C7 [Vega]
ICGC DataPortalENSG00000170426
TCGA cBioPortalSDR9C7
AceView (NCBI)SDR9C7
Genatlas (Paris)SDR9C7
WikiGenes121214
SOURCE (Princeton)SDR9C7
Genetics Home Reference (NIH)SDR9C7
Genomic and cartography
GoldenPath hg38 (UCSC)SDR9C7  -     chr12:56923154-56934405 -  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SDR9C7  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblSDR9C7 - 12q13.3 [CytoView hg19]  SDR9C7 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBISDR9C7 [Mapview hg19]  SDR9C7 [Mapview hg38]
OMIM609769   
Gene and transcription
Genbank (Entrez)AK122782 AY044434 BC101551 BC101553
RefSeq transcript (Entrez)NM_148897
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SDR9C7
Cluster EST : UnigeneHs.380178 [ NCBI ]
CGAP (NCI)Hs.380178
Alternative Splicing GalleryENSG00000170426
Gene ExpressionSDR9C7 [ NCBI-GEO ]   SDR9C7 [ EBI - ARRAY_EXPRESS ]   SDR9C7 [ SEEK ]   SDR9C7 [ MEM ]
Gene Expression Viewer (FireBrowse)SDR9C7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121214
GTEX Portal (Tissue expression)SDR9C7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEX9
Splice isoforms : SwissVarQ8NEX9
Catalytic activity : Enzyme1.1.1.- [ Enzyme-Expasy ]   1.1.1.-1.1.1.- [ IntEnz-EBI ]   1.1.1.- [ BRENDA ]   1.1.1.- [ KEGG ]   
PhosPhoSitePlusQ8NEX9
Domaine pattern : Prosite (Expaxy)ADH_SHORT (PS00061)   
Domains : Interpro (EBI)NAD(P)-bd_dom    Sc_DH/Rdtase_CS    SDR_fam   
Domain families : Pfam (Sanger)adh_short (PF00106)   
Domain families : Pfam (NCBI)pfam00106   
Conserved Domain (NCBI)SDR9C7
DMDM Disease mutations121214
Blocks (Seattle)SDR9C7
SuperfamilyQ8NEX9
Human Protein AtlasENSG00000170426
Peptide AtlasQ8NEX9
HPRD15235
IPIIPI00168797   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEX9
IntAct (EBI)Q8NEX9
FunCoupENSG00000170426
BioGRIDSDR9C7
STRING (EMBL)SDR9C7
ZODIACSDR9C7
Ontologies - Pathways
QuickGOQ8NEX9
Ontology : AmiGOretinol dehydrogenase activity  nucleolus  cytosol  oxidation-reduction process  
Ontology : EGO-EBIretinol dehydrogenase activity  nucleolus  cytosol  oxidation-reduction process  
NDEx NetworkSDR9C7
Atlas of Cancer Signalling NetworkSDR9C7
Wikipedia pathwaysSDR9C7
Orthology - Evolution
OrthoDB121214
GeneTree (enSembl)ENSG00000170426
Phylogenetic Trees/Animal Genes : TreeFamSDR9C7
HOVERGENQ8NEX9
HOGENOMQ8NEX9
Homologs : HomoloGeneSDR9C7
Homology/Alignments : Family Browser (UCSC)SDR9C7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSDR9C7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SDR9C7
dbVarSDR9C7
ClinVarSDR9C7
1000_GenomesSDR9C7 
Exome Variant ServerSDR9C7
ExAC (Exome Aggregation Consortium)SDR9C7 (select the gene name)
Genetic variants : HAPMAP121214
Genomic Variants (DGV)SDR9C7 [DGVbeta]
DECIPHERSDR9C7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSDR9C7 
Mutations
ICGC Data PortalSDR9C7 
TCGA Data PortalSDR9C7 
Broad Tumor PortalSDR9C7
OASIS PortalSDR9C7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSDR9C7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSDR9C7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SDR9C7
DgiDB (Drug Gene Interaction Database)SDR9C7
DoCM (Curated mutations)SDR9C7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SDR9C7 (select a term)
intoGenSDR9C7
Cancer3DSDR9C7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609769   
Orphanet
MedgenSDR9C7
Genetic Testing Registry SDR9C7
NextProtQ8NEX9 [Medical]
TSGene121214
GENETestsSDR9C7
Target ValidationSDR9C7
Huge Navigator SDR9C7 [HugePedia]
snp3D : Map Gene to Disease121214
BioCentury BCIQSDR9C7
ClinGenSDR9C7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121214
Chemical/Pharm GKB GenePA164725648
Clinical trialSDR9C7
Miscellaneous
canSAR (ICR)SDR9C7 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSDR9C7
EVEXSDR9C7
GoPubMedSDR9C7
iHOPSDR9C7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:06:47 CEST 2017

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