Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SEBOX (SEBOX homeobox)

Identity

Alias_symbol (synonym)OG9
OG9X
Other aliasOG-9
HGNC (Hugo) SEBOX
LocusID (NCBI) 645832
Atlas_Id 73077
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28364268 and ends at 28365151 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEBOX   32942
Cards
Entrez_Gene (NCBI)SEBOX  645832  SEBOX homeobox
AliasesOG-9; OG9; OG9X
GeneCards (Weizmann)SEBOX
Ensembl hg19 (Hinxton)ENSG00000274529 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274529 [Gene_View]  chr17:28364268-28365151 [Contig_View]  SEBOX [Vega]
ICGC DataPortalENSG00000274529
TCGA cBioPortalSEBOX
AceView (NCBI)SEBOX
Genatlas (Paris)SEBOX
WikiGenes645832
SOURCE (Princeton)SEBOX
Genetics Home Reference (NIH)SEBOX
Genomic and cartography
GoldenPath hg38 (UCSC)SEBOX  -     chr17:28364268-28365151 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEBOX  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblSEBOX - 17q11.2 [CytoView hg19]  SEBOX - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBISEBOX [Mapview hg19]  SEBOX [Mapview hg38]
OMIM610975   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080837 NM_001083896
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEBOX
Alternative Splicing GalleryENSG00000274529
Gene ExpressionSEBOX [ NCBI-GEO ]   SEBOX [ EBI - ARRAY_EXPRESS ]   SEBOX [ SEEK ]   SEBOX [ MEM ]
Gene Expression Viewer (FireBrowse)SEBOX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645832
GTEX Portal (Tissue expression)SEBOX
Human Protein AtlasENSG00000274529-SEBOX [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HB31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HB31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HB31
Splice isoforms : SwissVarQ9HB31
PhosPhoSitePlusQ9HB31
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)SEBOX
DMDM Disease mutations645832
Blocks (Seattle)SEBOX
SuperfamilyQ9HB31
Human Protein Atlas [tissue]ENSG00000274529-SEBOX [tissue]
Peptide AtlasQ9HB31
IPIIPI00029501   IPI01018949   IPI00937325   
Protein Interaction databases
DIP (DOE-UCLA)Q9HB31
IntAct (EBI)Q9HB31
FunCoupENSG00000274529
BioGRIDSEBOX
STRING (EMBL)SEBOX
ZODIACSEBOX
Ontologies - Pathways
QuickGOQ9HB31
Ontology : AmiGOmolecular_function  DNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  biological_process  cell differentiation  
Ontology : EGO-EBImolecular_function  DNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  biological_process  cell differentiation  
NDEx NetworkSEBOX
Atlas of Cancer Signalling NetworkSEBOX
Wikipedia pathwaysSEBOX
Orthology - Evolution
OrthoDB645832
GeneTree (enSembl)ENSG00000274529
Phylogenetic Trees/Animal Genes : TreeFamSEBOX
HOVERGENQ9HB31
HOGENOMQ9HB31
Homologs : HomoloGeneEBMX
Homology/Alignments : Family Browser (UCSC)SEBOX
Gene fusions - Rearrangements
Tumor Fusion PortalSEBOX
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEBOX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEBOX
dbVarSEBOX
ClinVarSEBOX
1000_GenomesSEBOX 
Exome Variant ServerSEBOX
ExAC (Exome Aggregation Consortium)ENSG00000274529
GNOMAD BrowserENSG00000274529
Genetic variants : HAPMAP645832
Genomic Variants (DGV)SEBOX [DGVbeta]
DECIPHERSEBOX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEBOX 
Mutations
ICGC Data PortalSEBOX 
TCGA Data PortalSEBOX 
Broad Tumor PortalSEBOX
OASIS PortalSEBOX [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSEBOX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEBOX
DgiDB (Drug Gene Interaction Database)SEBOX
DoCM (Curated mutations)SEBOX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEBOX (select a term)
intoGenSEBOX
Cancer3DSEBOX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610975   
Orphanet
DisGeNETSEBOX
MedgenSEBOX
Genetic Testing Registry SEBOX
NextProtQ9HB31 [Medical]
TSGene645832
GENETestsSEBOX
Target ValidationSEBOX
Huge Navigator SEBOX [HugePedia]
snp3D : Map Gene to Disease645832
BioCentury BCIQSEBOX
ClinGenSEBOX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645832
Chemical/Pharm GKB GenePA162402574
Clinical trialSEBOX
Miscellaneous
canSAR (ICR)SEBOX (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEBOX
EVEXSEBOX
GoPubMedSEBOX
iHOPSEBOX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:36:45 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.