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SEC14L3 (SEC14 like lipid binding 3)

Identity

Alias_namesSEC14-like 3 (S. cerevisiae)
SEC14-like lipid binding 3
Alias_symbol (synonym)TAP2
Other alias
HGNC (Hugo) SEC14L3
LocusID (NCBI) 266629
Atlas_Id 73081
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30459229 and ends at 30472047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CPT1B (22q13.33) / SEC14L3 (22q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEC14L3   18655
Cards
Entrez_Gene (NCBI)SEC14L3  266629  SEC14 like lipid binding 3
AliasesTAP2
GeneCards (Weizmann)SEC14L3
Ensembl hg19 (Hinxton)ENSG00000100012 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100012 [Gene_View]  chr22:30459229-30472047 [Contig_View]  SEC14L3 [Vega]
ICGC DataPortalENSG00000100012
TCGA cBioPortalSEC14L3
AceView (NCBI)SEC14L3
Genatlas (Paris)SEC14L3
WikiGenes266629
SOURCE (Princeton)SEC14L3
Genetics Home Reference (NIH)SEC14L3
Genomic and cartography
GoldenPath hg38 (UCSC)SEC14L3  -     chr22:30459229-30472047 -  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC14L3  -     22q12.2   [Description]    (hg19-Feb_2009)
EnsemblSEC14L3 - 22q12.2 [CytoView hg19]  SEC14L3 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBISEC14L3 [Mapview hg19]  SEC14L3 [Mapview hg38]
OMIM612824   
Gene and transcription
Genbank (Entrez)AK131358 AK298079 AY158086 AY240872 BC069641
RefSeq transcript (Entrez)NM_001257378 NM_001257379 NM_001257382 NM_174975
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEC14L3
Cluster EST : UnigeneHs.505601 [ NCBI ]
CGAP (NCI)Hs.505601
Alternative Splicing GalleryENSG00000100012
Gene ExpressionSEC14L3 [ NCBI-GEO ]   SEC14L3 [ EBI - ARRAY_EXPRESS ]   SEC14L3 [ SEEK ]   SEC14L3 [ MEM ]
Gene Expression Viewer (FireBrowse)SEC14L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)266629
GTEX Portal (Tissue expression)SEC14L3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UDX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UDX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UDX4
Splice isoforms : SwissVarQ9UDX4
PhosPhoSitePlusQ9UDX4
Domaine pattern : Prosite (Expaxy)CRAL_TRIO (PS50191)    GOLD (PS50866)   
Domains : Interpro (EBI)CRAL-bd_toc_tran    CRAL-TRIO_dom    CRAL/TRIO_N_dom    GOLD_dom   
Domain families : Pfam (Sanger)CRAL_TRIO (PF00650)   
Domain families : Pfam (NCBI)pfam00650   
Domain families : Smart (EMBL)CRAL_TRIO_N (SM01100)  SEC14 (SM00516)  
Conserved Domain (NCBI)SEC14L3
DMDM Disease mutations266629
Blocks (Seattle)SEC14L3
PDB (SRS)4UYB   
PDB (PDBSum)4UYB   
PDB (IMB)4UYB   
PDB (RSDB)4UYB   
Structural Biology KnowledgeBase4UYB   
SCOP (Structural Classification of Proteins)4UYB   
CATH (Classification of proteins structures)4UYB   
SuperfamilyQ9UDX4
Human Protein AtlasENSG00000100012
Peptide AtlasQ9UDX4
HPRD15311
IPIIPI00894186   IPI00894555   IPI00894077   IPI00894175   IPI00893808   IPI00893948   
Protein Interaction databases
DIP (DOE-UCLA)Q9UDX4
IntAct (EBI)Q9UDX4
FunCoupENSG00000100012
BioGRIDSEC14L3
STRING (EMBL)SEC14L3
ZODIACSEC14L3
Ontologies - Pathways
QuickGOQ9UDX4
Ontology : AmiGOtransporter activity  intracellular  transport  lipid binding  integral component of membrane  extracellular exosome  
Ontology : EGO-EBItransporter activity  intracellular  transport  lipid binding  integral component of membrane  extracellular exosome  
NDEx NetworkSEC14L3
Atlas of Cancer Signalling NetworkSEC14L3
Wikipedia pathwaysSEC14L3
Orthology - Evolution
OrthoDB266629
GeneTree (enSembl)ENSG00000100012
Phylogenetic Trees/Animal Genes : TreeFamSEC14L3
HOVERGENQ9UDX4
HOGENOMQ9UDX4
Homologs : HomoloGeneSEC14L3
Homology/Alignments : Family Browser (UCSC)SEC14L3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC14L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC14L3
dbVarSEC14L3
ClinVarSEC14L3
1000_GenomesSEC14L3 
Exome Variant ServerSEC14L3
ExAC (Exome Aggregation Consortium)SEC14L3 (select the gene name)
Genetic variants : HAPMAP266629
Genomic Variants (DGV)SEC14L3 [DGVbeta]
DECIPHERSEC14L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC14L3 
Mutations
ICGC Data PortalSEC14L3 
TCGA Data PortalSEC14L3 
Broad Tumor PortalSEC14L3
OASIS PortalSEC14L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC14L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEC14L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC14L3
DgiDB (Drug Gene Interaction Database)SEC14L3
DoCM (Curated mutations)SEC14L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC14L3 (select a term)
intoGenSEC14L3
Cancer3DSEC14L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612824   
Orphanet
MedgenSEC14L3
Genetic Testing Registry SEC14L3
NextProtQ9UDX4 [Medical]
TSGene266629
GENETestsSEC14L3
Target ValidationSEC14L3
Huge Navigator SEC14L3 [HugePedia]
snp3D : Map Gene to Disease266629
BioCentury BCIQSEC14L3
ClinGenSEC14L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD266629
Chemical/Pharm GKB GenePA134960743
Clinical trialSEC14L3
Miscellaneous
canSAR (ICR)SEC14L3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC14L3
EVEXSEC14L3
GoPubMedSEC14L3
iHOPSEC14L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:15 CEST 2017

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