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SEC14L4 (SEC14 like lipid binding 4)

Identity

Alias (NCBI)TAP3
HGNC (Hugo) SEC14L4
HGNC Alias symbTAP3
dJ130H16.5
HGNC Alias nametocopherol-associated protein 3
HGNC Previous nameSEC14-like 4 (S. cerevisiae)
 SEC14-like lipid binding 4
LocusID (NCBI) 284904
Atlas_Id 73082
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30488906 and ends at 30505695 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SEC14L4   20627
Cards
Entrez_Gene (NCBI)SEC14L4    SEC14 like lipid binding 4
AliasesTAP3
GeneCards (Weizmann)SEC14L4
Ensembl hg19 (Hinxton)ENSG00000133488 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133488 [Gene_View]  ENSG00000133488 [Sequence]  chr22:30488906-30505695 [Contig_View]  SEC14L4 [Vega]
ICGC DataPortalENSG00000133488
TCGA cBioPortalSEC14L4
AceView (NCBI)SEC14L4
Genatlas (Paris)SEC14L4
SOURCE (Princeton)SEC14L4
Genetics Home Reference (NIH)SEC14L4
Genomic and cartography
GoldenPath hg38 (UCSC)SEC14L4  -     chr22:30488906-30505695 -  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC14L4  -     22q12.2   [Description]    (hg19-Feb_2009)
GoldenPathSEC14L4 - 22q12.2 [CytoView hg19]  SEC14L4 - 22q12.2 [CytoView hg38]
ImmunoBaseENSG00000133488
Genome Data Viewer NCBISEC14L4 [Mapview hg19]  
OMIM612825   
Gene and transcription
Genbank (Entrez)AK092002 AK093418 AK093448 AY158085 BC136358
RefSeq transcript (Entrez)NM_001161368 NM_174977
Consensus coding sequences : CCDS (NCBI)SEC14L4
Gene ExpressionSEC14L4 [ NCBI-GEO ]   SEC14L4 [ EBI - ARRAY_EXPRESS ]   SEC14L4 [ SEEK ]   SEC14L4 [ MEM ]
Gene Expression Viewer (FireBrowse)SEC14L4 [ Firebrowse - Broad ]
GenevisibleExpression of SEC14L4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284904
GTEX Portal (Tissue expression)SEC14L4
Human Protein AtlasENSG00000133488-SEC14L4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UDX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UDX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UDX3
PhosPhoSitePlusQ9UDX3
Domaine pattern : Prosite (Expaxy)CRAL_TRIO (PS50191)    GOLD (PS50866)   
Domains : Interpro (EBI)CRAL-TRIO_dom    CRAL-TRIO_dom_sf    CRAL/TRIO_N_dom    CRAL/TRIO_N_dom_sf    GOLD_dom    GOLD_dom_sf   
Domain families : Pfam (Sanger)CRAL_TRIO (PF00650)   
Domain families : Pfam (NCBI)pfam00650   
Domain families : Smart (EMBL)CRAL_TRIO_N (SM01100)  SEC14 (SM00516)  
Conserved Domain (NCBI)SEC14L4
PDB (RSDB)4TLG   
PDB Europe4TLG   
PDB (PDBSum)4TLG   
PDB (IMB)4TLG   
Structural Biology KnowledgeBase4TLG   
SCOP (Structural Classification of Proteins)4TLG   
CATH (Classification of proteins structures)4TLG   
SuperfamilyQ9UDX3
AlphaFold pdb e-kbQ9UDX3   
Human Protein Atlas [tissue]ENSG00000133488-SEC14L4 [tissue]
HPRD15312
Protein Interaction databases
DIP (DOE-UCLA)Q9UDX3
IntAct (EBI)Q9UDX3
BioGRIDSEC14L4
STRING (EMBL)SEC14L4
ZODIACSEC14L4
Ontologies - Pathways
QuickGOQ9UDX3
Ontology : AmiGOprotein binding  lipid binding  
Ontology : EGO-EBIprotein binding  lipid binding  
NDEx NetworkSEC14L4
Atlas of Cancer Signalling NetworkSEC14L4
Wikipedia pathwaysSEC14L4
Orthology - Evolution
OrthoDB284904
GeneTree (enSembl)ENSG00000133488
Phylogenetic Trees/Animal Genes : TreeFamSEC14L4
Homologs : HomoloGeneSEC14L4
Homology/Alignments : Family Browser (UCSC)SEC14L4
Gene fusions - Rearrangements
Fusion : QuiverSEC14L4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC14L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC14L4
dbVarSEC14L4
ClinVarSEC14L4
MonarchSEC14L4
1000_GenomesSEC14L4 
Exome Variant ServerSEC14L4
GNOMAD BrowserENSG00000133488
Varsome BrowserSEC14L4
ACMGSEC14L4 variants
VarityQ9UDX3
Genomic Variants (DGV)SEC14L4 [DGVbeta]
DECIPHERSEC14L4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC14L4 
Mutations
ICGC Data PortalSEC14L4 
TCGA Data PortalSEC14L4 
Broad Tumor PortalSEC14L4
OASIS PortalSEC14L4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC14L4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSEC14L4
Mutations and Diseases : HGMDSEC14L4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSEC14L4
DgiDB (Drug Gene Interaction Database)SEC14L4
DoCM (Curated mutations)SEC14L4
CIViC (Clinical Interpretations of Variants in Cancer)SEC14L4
Cancer3DSEC14L4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612825   
Orphanet
DisGeNETSEC14L4
MedgenSEC14L4
Genetic Testing Registry SEC14L4
NextProtQ9UDX3 [Medical]
GENETestsSEC14L4
Target ValidationSEC14L4
Huge Navigator SEC14L4 [HugePedia]
ClinGenSEC14L4
Clinical trials, drugs, therapy
MyCancerGenomeSEC14L4
Protein Interactions : CTDSEC14L4
Pharm GKB GenePA134979694
PharosQ9UDX3
Clinical trialSEC14L4
Miscellaneous
canSAR (ICR)SEC14L4
HarmonizomeSEC14L4
DataMed IndexSEC14L4
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSEC14L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:20:07 CEST 2021

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