Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SEC14L4 (SEC14-like 4 (S. cerevisiae))

Identity

Alias_namesSEC14-like 4 (S. cerevisiae)
SEC14-like lipid binding 4
Alias_symbol (synonym)TAP3
dJ130H16.5
Other alias
HGNC (Hugo) SEC14L4
LocusID (NCBI) 284904
Atlas_Id 73082
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30884898 and ends at 30901698 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEC14L4   20627
Cards
Entrez_Gene (NCBI)SEC14L4  284904  SEC14-like 4 (S. cerevisiae)
AliasesTAP3
GeneCards (Weizmann)SEC14L4
Ensembl hg19 (Hinxton)ENSG00000133488 [Gene_View]  chr22:30884898-30901698 [Contig_View]  SEC14L4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000133488 [Gene_View]  chr22:30884898-30901698 [Contig_View]  SEC14L4 [Vega]
ICGC DataPortalENSG00000133488
TCGA cBioPortalSEC14L4
AceView (NCBI)SEC14L4
Genatlas (Paris)SEC14L4
WikiGenes284904
SOURCE (Princeton)SEC14L4
Genetics Home Reference (NIH)SEC14L4
Genomic and cartography
GoldenPath hg19 (UCSC)SEC14L4  -     chr22:30884898-30901698 -  22q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SEC14L4  -     22q12.2   [Description]    (hg38-Dec_2013)
EnsemblSEC14L4 - 22q12.2 [CytoView hg19]  SEC14L4 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBISEC14L4 [Mapview hg19]  SEC14L4 [Mapview hg38]
OMIM612825   
Gene and transcription
Genbank (Entrez)AK092002 AK093418 AK093448 AY158085 BC136358
RefSeq transcript (Entrez)NM_001161368 NM_174977
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)SEC14L4
Cluster EST : UnigeneHs.517541 [ NCBI ]
CGAP (NCI)Hs.517541
Alternative Splicing GalleryENSG00000133488
Gene ExpressionSEC14L4 [ NCBI-GEO ]   SEC14L4 [ EBI - ARRAY_EXPRESS ]   SEC14L4 [ SEEK ]   SEC14L4 [ MEM ]
Gene Expression Viewer (FireBrowse)SEC14L4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284904
GTEX Portal (Tissue expression)SEC14L4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UDX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UDX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UDX3
Splice isoforms : SwissVarQ9UDX3
PhosPhoSitePlusQ9UDX3
Domaine pattern : Prosite (Expaxy)CRAL_TRIO (PS50191)    GOLD (PS50866)   
Domains : Interpro (EBI)CRAL-bd_toc_tran    CRAL-TRIO_dom    CRAL/TRIO_N_dom    GOLD   
Domain families : Pfam (Sanger)CRAL_TRIO (PF00650)    CRAL_TRIO_N (PF03765)    GOLD_2 (PF13897)   
Domain families : Pfam (NCBI)pfam00650    pfam03765    pfam13897   
Domain families : Smart (EMBL)CRAL_TRIO_N (SM01100)  SEC14 (SM00516)  
Conserved Domain (NCBI)SEC14L4
DMDM Disease mutations284904
Blocks (Seattle)SEC14L4
PDB (SRS)4TLG   
PDB (PDBSum)4TLG   
PDB (IMB)4TLG   
PDB (RSDB)4TLG   
Structural Biology KnowledgeBase4TLG   
SCOP (Structural Classification of Proteins)4TLG   
CATH (Classification of proteins structures)4TLG   
SuperfamilyQ9UDX3
Human Protein AtlasENSG00000133488
Peptide AtlasQ9UDX3
HPRD15312
IPIIPI00004815   IPI01010997   IPI00902678   IPI00892967   IPI00892619   IPI00892741   
Protein Interaction databases
DIP (DOE-UCLA)Q9UDX3
IntAct (EBI)Q9UDX3
FunCoupENSG00000133488
BioGRIDSEC14L4
STRING (EMBL)SEC14L4
ZODIACSEC14L4
Ontologies - Pathways
QuickGOQ9UDX3
Ontology : AmiGOtransporter activity  protein binding  intracellular  transport  lipid binding  integral component of membrane  
Ontology : EGO-EBItransporter activity  protein binding  intracellular  transport  lipid binding  integral component of membrane  
NDEx NetworkSEC14L4
Atlas of Cancer Signalling NetworkSEC14L4
Wikipedia pathwaysSEC14L4
Orthology - Evolution
OrthoDB284904
GeneTree (enSembl)ENSG00000133488
Phylogenetic Trees/Animal Genes : TreeFamSEC14L4
HOVERGENQ9UDX3
HOGENOMQ9UDX3
Homologs : HomoloGeneSEC14L4
Homology/Alignments : Family Browser (UCSC)SEC14L4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC14L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC14L4
dbVarSEC14L4
ClinVarSEC14L4
1000_GenomesSEC14L4 
Exome Variant ServerSEC14L4
ExAC (Exome Aggregation Consortium)SEC14L4 (select the gene name)
Genetic variants : HAPMAP284904
Genomic Variants (DGV)SEC14L4 [DGVbeta]
DECIPHER (Syndromes)22:30884898-30901698  ENSG00000133488
CONAN: Copy Number AnalysisSEC14L4 
Mutations
ICGC Data PortalSEC14L4 
TCGA Data PortalSEC14L4 
Broad Tumor PortalSEC14L4
OASIS PortalSEC14L4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC14L4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEC14L4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC14L4
DgiDB (Drug Gene Interaction Database)SEC14L4
DoCM (Curated mutations)SEC14L4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC14L4 (select a term)
intoGenSEC14L4
Cancer3DSEC14L4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612825   
Orphanet
MedgenSEC14L4
Genetic Testing Registry SEC14L4
NextProtQ9UDX3 [Medical]
TSGene284904
GENETestsSEC14L4
Huge Navigator SEC14L4 [HugePedia]
snp3D : Map Gene to Disease284904
BioCentury BCIQSEC14L4
ClinGenSEC14L4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284904
Chemical/Pharm GKB GenePA134979694
Clinical trialSEC14L4
Miscellaneous
canSAR (ICR)SEC14L4 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC14L4
EVEXSEC14L4
GoPubMedSEC14L4
iHOPSEC14L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:41 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.