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SEC14L5 (SEC14 like lipid binding 5)

Identity

Alias_namesSEC14-like 5 (S. cerevisiae)
SEC14-like lipid binding 5
Alias_symbol (synonym)KIAA0420
PRELID4B
Other alias
HGNC (Hugo) SEC14L5
LocusID (NCBI) 9717
Atlas_Id 73083
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4958317 and ends at 5019155 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ALG1 (16p13.3) / SEC14L5 (16p13.3)PPL (16p13.3) / SEC14L5 (16p13.3)SEC14L5 (16p13.3) / MBP (18q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEC14L5   29032
Cards
Entrez_Gene (NCBI)SEC14L5  9717  SEC14 like lipid binding 5
AliasesPRELID4B
GeneCards (Weizmann)SEC14L5
Ensembl hg19 (Hinxton)ENSG00000103184 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103184 [Gene_View]  chr16:4958317-5019155 [Contig_View]  SEC14L5 [Vega]
ICGC DataPortalENSG00000103184
TCGA cBioPortalSEC14L5
AceView (NCBI)SEC14L5
Genatlas (Paris)SEC14L5
WikiGenes9717
SOURCE (Princeton)SEC14L5
Genetics Home Reference (NIH)SEC14L5
Genomic and cartography
GoldenPath hg38 (UCSC)SEC14L5  -     chr16:4958317-5019155 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC14L5  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblSEC14L5 - 16p13.3 [CytoView hg19]  SEC14L5 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBISEC14L5 [Mapview hg19]  SEC14L5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB007880 BC045685 BC166626
RefSeq transcript (Entrez)NM_014692
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEC14L5
Cluster EST : UnigeneHs.512856 [ NCBI ]
CGAP (NCI)Hs.512856
Alternative Splicing GalleryENSG00000103184
Gene ExpressionSEC14L5 [ NCBI-GEO ]   SEC14L5 [ EBI - ARRAY_EXPRESS ]   SEC14L5 [ SEEK ]   SEC14L5 [ MEM ]
Gene Expression Viewer (FireBrowse)SEC14L5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9717
GTEX Portal (Tissue expression)SEC14L5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43304   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43304  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43304
Splice isoforms : SwissVarO43304
PhosPhoSitePlusO43304
Domaine pattern : Prosite (Expaxy)CRAL_TRIO (PS50191)    GOLD (PS50866)    PRELI_MSF1 (PS50904)   
Domains : Interpro (EBI)CRAL-bd_toc_tran    CRAL-TRIO_dom    CRAL/TRIO_N_dom    GOLD_dom    PRELI/MSF1_dom   
Domain families : Pfam (Sanger)CRAL_TRIO (PF00650)    CRAL_TRIO_N (PF03765)    PRELI (PF04707)   
Domain families : Pfam (NCBI)pfam00650    pfam03765    pfam04707   
Domain families : Smart (EMBL)CRAL_TRIO_N (SM01100)  SEC14 (SM00516)  
Conserved Domain (NCBI)SEC14L5
DMDM Disease mutations9717
Blocks (Seattle)SEC14L5
SuperfamilyO43304
Human Protein AtlasENSG00000103184
Peptide AtlasO43304
IPIIPI00853360   
Protein Interaction databases
DIP (DOE-UCLA)O43304
IntAct (EBI)O43304
FunCoupENSG00000103184
BioGRIDSEC14L5
STRING (EMBL)SEC14L5
ZODIACSEC14L5
Ontologies - Pathways
QuickGOO43304
Ontology : AmiGOtransporter activity  intracellular  transport  integral component of membrane  
Ontology : EGO-EBItransporter activity  intracellular  transport  integral component of membrane  
NDEx NetworkSEC14L5
Atlas of Cancer Signalling NetworkSEC14L5
Wikipedia pathwaysSEC14L5
Orthology - Evolution
OrthoDB9717
GeneTree (enSembl)ENSG00000103184
Phylogenetic Trees/Animal Genes : TreeFamSEC14L5
HOVERGENO43304
HOGENOMO43304
Homologs : HomoloGeneSEC14L5
Homology/Alignments : Family Browser (UCSC)SEC14L5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC14L5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC14L5
dbVarSEC14L5
ClinVarSEC14L5
1000_GenomesSEC14L5 
Exome Variant ServerSEC14L5
ExAC (Exome Aggregation Consortium)SEC14L5 (select the gene name)
Genetic variants : HAPMAP9717
Genomic Variants (DGV)SEC14L5 [DGVbeta]
DECIPHERSEC14L5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC14L5 
Mutations
ICGC Data PortalSEC14L5 
TCGA Data PortalSEC14L5 
Broad Tumor PortalSEC14L5
OASIS PortalSEC14L5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC14L5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEC14L5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC14L5
DgiDB (Drug Gene Interaction Database)SEC14L5
DoCM (Curated mutations)SEC14L5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC14L5 (select a term)
intoGenSEC14L5
Cancer3DSEC14L5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSEC14L5
Genetic Testing Registry SEC14L5
NextProtO43304 [Medical]
TSGene9717
GENETestsSEC14L5
Target ValidationSEC14L5
Huge Navigator SEC14L5 [HugePedia]
snp3D : Map Gene to Disease9717
BioCentury BCIQSEC14L5
ClinGenSEC14L5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9717
Chemical/Pharm GKB GenePA142670939
Clinical trialSEC14L5
Miscellaneous
canSAR (ICR)SEC14L5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC14L5
EVEXSEC14L5
GoPubMedSEC14L5
iHOPSEC14L5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:15 CEST 2017

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