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SEC14L6 (SEC14 like lipid binding 6)

Identity

Alias (NCBI)-
HGNC (Hugo) SEC14L6
HGNC Previous nameSEC14-like 6 (S. cerevisiae)
 SEC14-like 6
 SEC14-like lipid binding 6
LocusID (NCBI) 730005
Atlas_Id 73084
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30522788 and ends at 30542315 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SEC14L6 (22q12.2) / NCKIPSD (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SEC14L6   40047
Cards
Entrez_Gene (NCBI)SEC14L6    SEC14 like lipid binding 6
Aliases
GeneCards (Weizmann)SEC14L6
Ensembl hg19 (Hinxton)ENSG00000214491 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214491 [Gene_View]  ENSG00000214491 [Sequence]  chr22:30522788-30542315 [Contig_View]  SEC14L6 [Vega]
ICGC DataPortalENSG00000214491
TCGA cBioPortalSEC14L6
AceView (NCBI)SEC14L6
Genatlas (Paris)SEC14L6
SOURCE (Princeton)SEC14L6
Genetics Home Reference (NIH)SEC14L6
Genomic and cartography
GoldenPath hg38 (UCSC)SEC14L6  -     chr22:30522788-30542315 -  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC14L6  -     22q12.2   [Description]    (hg19-Feb_2009)
GoldenPathSEC14L6 - 22q12.2 [CytoView hg19]  SEC14L6 - 22q12.2 [CytoView hg38]
ImmunoBaseENSG00000214491
genome Data Viewer NCBISEC14L6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BG163986 BX283471 CN413798
RefSeq transcript (Entrez)NM_001193336 NM_001353441 NM_001353443
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEC14L6
Alternative Splicing GalleryENSG00000214491
Gene ExpressionSEC14L6 [ NCBI-GEO ]   SEC14L6 [ EBI - ARRAY_EXPRESS ]   SEC14L6 [ SEEK ]   SEC14L6 [ MEM ]
Gene Expression Viewer (FireBrowse)SEC14L6 [ Firebrowse - Broad ]
GenevisibleExpression of SEC14L6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)730005
GTEX Portal (Tissue expression)SEC14L6
Human Protein AtlasENSG00000214491-SEC14L6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtB5MCN3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB5MCN3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB5MCN3
Splice isoforms : SwissVarB5MCN3
PhosPhoSitePlusB5MCN3
Domaine pattern : Prosite (Expaxy)CRAL_TRIO (PS50191)    GOLD (PS50866)   
Domains : Interpro (EBI)CRAL-TRIO_dom    CRAL-TRIO_dom_sf    CRAL/TRIO_N_dom    CRAL/TRIO_N_dom_sf    GOLD_dom    GOLD_dom_sf   
Domain families : Pfam (Sanger)CRAL_TRIO (PF00650)   
Domain families : Pfam (NCBI)pfam00650   
Domain families : Smart (EMBL)CRAL_TRIO_N (SM01100)  SEC14 (SM00516)  
Conserved Domain (NCBI)SEC14L6
Blocks (Seattle)SEC14L6
SuperfamilyB5MCN3
Human Protein Atlas [tissue]ENSG00000214491-SEC14L6 [tissue]
Peptide AtlasB5MCN3
IPIIPI00892948   IPI00892599   
Protein Interaction databases
DIP (DOE-UCLA)B5MCN3
IntAct (EBI)B5MCN3
BioGRIDSEC14L6
STRING (EMBL)SEC14L6
ZODIACSEC14L6
Ontologies - Pathways
QuickGOB5MCN3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSEC14L6
Atlas of Cancer Signalling NetworkSEC14L6
Wikipedia pathwaysSEC14L6
Orthology - Evolution
OrthoDB730005
GeneTree (enSembl)ENSG00000214491
Phylogenetic Trees/Animal Genes : TreeFamSEC14L6
HOGENOMB5MCN3
Homologs : HomoloGeneSEC14L6
Homology/Alignments : Family Browser (UCSC)SEC14L6
Gene fusions - Rearrangements
Fusion : QuiverSEC14L6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC14L6 [hg38]
dbVarSEC14L6
ClinVarSEC14L6
MonarchSEC14L6
1000_GenomesSEC14L6 
Exome Variant ServerSEC14L6
GNOMAD BrowserENSG00000214491
Varsome BrowserSEC14L6
Genomic Variants (DGV)SEC14L6 [DGVbeta]
DECIPHERSEC14L6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC14L6 
Mutations
ICGC Data PortalSEC14L6 
TCGA Data PortalSEC14L6 
Broad Tumor PortalSEC14L6
OASIS PortalSEC14L6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC14L6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSEC14L6
Mutations and Diseases : HGMDSEC14L6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC14L6
DgiDB (Drug Gene Interaction Database)SEC14L6
DoCM (Curated mutations)SEC14L6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC14L6 (select a term)
intoGenSEC14L6
Cancer3DSEC14L6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSEC14L6
MedgenSEC14L6
Genetic Testing Registry SEC14L6
NextProtB5MCN3 [Medical]
GENETestsSEC14L6
Target ValidationSEC14L6
Huge Navigator SEC14L6 [HugePedia]
ClinGenSEC14L6
Clinical trials, drugs, therapy
MyCancerGenomeSEC14L6
Protein Interactions : CTD
Pharm GKB GenePA166049065
Clinical trialSEC14L6
Miscellaneous
canSAR (ICR)SEC14L6 (select the gene name)
HarmonizomeSEC14L6
DataMed IndexSEC14L6
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC14L6
EVEXSEC14L6
GoPubMedSEC14L6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:26:22 CET 2020
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