Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SEC16B (SEC16 homolog B (S. cerevisiae))

Identity

Alias_namesLZTR2
leucine zipper transcription regulator 2
SEC16 homolog B (S. cerevisiae)
Alias_symbol (synonym)RGPR
PGPR-p117
Sec16S
Other aliasSEC16S
HGNC (Hugo) SEC16B
LocusID (NCBI) 89866
Atlas_Id 73085
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 177898242 and ends at 177939050 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SEC16B (1q25.2) / SEC16B (1q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEC16B   30301
Cards
Entrez_Gene (NCBI)SEC16B  89866  SEC16 homolog B (S. cerevisiae)
AliasesLZTR2; PGPR-p117; RGPR; SEC16S
GeneCards (Weizmann)SEC16B
Ensembl hg19 (Hinxton)ENSG00000120341 [Gene_View]  chr1:177898242-177939050 [Contig_View]  SEC16B [Vega]
Ensembl hg38 (Hinxton)ENSG00000120341 [Gene_View]  chr1:177898242-177939050 [Contig_View]  SEC16B [Vega]
ICGC DataPortalENSG00000120341
TCGA cBioPortalSEC16B
AceView (NCBI)SEC16B
Genatlas (Paris)SEC16B
WikiGenes89866
SOURCE (Princeton)SEC16B
Genetics Home Reference (NIH)SEC16B
Genomic and cartography
GoldenPath hg19 (UCSC)SEC16B  -     chr1:177898242-177939050 -  1q25.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SEC16B  -     1q25.2   [Description]    (hg38-Dec_2013)
EnsemblSEC16B - 1q25.2 [CytoView hg19]  SEC16B - 1q25.2 [CytoView hg38]
Mapping of homologs : NCBISEC16B [Mapview hg19]  SEC16B [Mapview hg38]
OMIM612855   
Gene and transcription
Genbank (Entrez)AB063357 AK074451 AK090971 AK093939 AK098627
RefSeq transcript (Entrez)NM_033127
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)SEC16B
Cluster EST : UnigeneHs.149540 [ NCBI ]
CGAP (NCI)Hs.149540
Alternative Splicing GalleryENSG00000120341
Gene ExpressionSEC16B [ NCBI-GEO ]   SEC16B [ EBI - ARRAY_EXPRESS ]   SEC16B [ SEEK ]   SEC16B [ MEM ]
Gene Expression Viewer (FireBrowse)SEC16B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89866
GTEX Portal (Tissue expression)SEC16B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JE7
Splice isoforms : SwissVarQ96JE7
PhosPhoSitePlusQ96JE7
Domains : Interpro (EBI)ACE1_Sec16_Sec31    Sec16    Sec16_CCD   
Domain families : Pfam (Sanger)Sec16 (PF12932)    Sec16_C (PF12931)   
Domain families : Pfam (NCBI)pfam12932    pfam12931   
Conserved Domain (NCBI)SEC16B
DMDM Disease mutations89866
Blocks (Seattle)SEC16B
SuperfamilyQ96JE7
Human Protein AtlasENSG00000120341
Peptide AtlasQ96JE7
HPRD11491
IPIIPI00896512   IPI00064112   IPI00908680   IPI00168781   IPI00896495   IPI00979965   
Protein Interaction databases
DIP (DOE-UCLA)Q96JE7
IntAct (EBI)Q96JE7
FunCoupENSG00000120341
BioGRIDSEC16B
STRING (EMBL)SEC16B
ZODIACSEC16B
Ontologies - Pathways
QuickGOQ96JE7
Ontology : AmiGOGolgi membrane  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum organization  peroxisome organization  positive regulation of gene expression  protein transport  peroxisome fission  intracellular membrane-bounded organelle  COPII vesicle coating  positive regulation of protein exit from endoplasmic reticulum  protein localization to endoplasmic reticulum  
Ontology : EGO-EBIGolgi membrane  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum organization  peroxisome organization  positive regulation of gene expression  protein transport  peroxisome fission  intracellular membrane-bounded organelle  COPII vesicle coating  positive regulation of protein exit from endoplasmic reticulum  protein localization to endoplasmic reticulum  
NDEx NetworkSEC16B
Atlas of Cancer Signalling NetworkSEC16B
Wikipedia pathwaysSEC16B
Orthology - Evolution
OrthoDB89866
GeneTree (enSembl)ENSG00000120341
Phylogenetic Trees/Animal Genes : TreeFamSEC16B
HOVERGENQ96JE7
HOGENOMQ96JE7
Homologs : HomoloGeneSEC16B
Homology/Alignments : Family Browser (UCSC)SEC16B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC16B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC16B
dbVarSEC16B
ClinVarSEC16B
1000_GenomesSEC16B 
Exome Variant ServerSEC16B
ExAC (Exome Aggregation Consortium)SEC16B (select the gene name)
Genetic variants : HAPMAP89866
Genomic Variants (DGV)SEC16B [DGVbeta]
DECIPHER (Syndromes)1:177898242-177939050  ENSG00000120341
CONAN: Copy Number AnalysisSEC16B 
Mutations
ICGC Data PortalSEC16B 
TCGA Data PortalSEC16B 
Broad Tumor PortalSEC16B
OASIS PortalSEC16B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC16B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEC16B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC16B
DgiDB (Drug Gene Interaction Database)SEC16B
DoCM (Curated mutations)SEC16B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC16B (select a term)
intoGenSEC16B
Cancer3DSEC16B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612855   
Orphanet
MedgenSEC16B
Genetic Testing Registry SEC16B
NextProtQ96JE7 [Medical]
TSGene89866
GENETestsSEC16B
Huge Navigator SEC16B [HugePedia]
snp3D : Map Gene to Disease89866
BioCentury BCIQSEC16B
ClinGenSEC16B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89866
Chemical/Pharm GKB GenePA162402680
Clinical trialSEC16B
Miscellaneous
canSAR (ICR)SEC16B (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC16B
EVEXSEC16B
GoPubMedSEC16B
iHOPSEC16B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:41 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.