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SEC22A (SEC22 homolog A, vesicle trafficking protein)

Identity

Alias_namesSEC22L2
SEC22 vesicle trafficking protein-like 2 (S. cerevisiae)
SEC22 vesicle trafficking protein homolog A (S. cerevisiae)
Other alias
HGNC (Hugo) SEC22A
LocusID (NCBI) 26984
Atlas_Id 56252
Location 3q21.1  [Link to chromosome band 3q21]
Location_base_pair Starts at 123201927 and ends at 123274135 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEC22A   20260
Cards
Entrez_Gene (NCBI)SEC22A  26984  SEC22 homolog A, vesicle trafficking protein
AliasesSEC22L2
GeneCards (Weizmann)SEC22A
Ensembl hg19 (Hinxton)ENSG00000121542 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121542 [Gene_View]  chr3:123201927-123274135 [Contig_View]  SEC22A [Vega]
ICGC DataPortalENSG00000121542
TCGA cBioPortalSEC22A
AceView (NCBI)SEC22A
Genatlas (Paris)SEC22A
WikiGenes26984
SOURCE (Princeton)SEC22A
Genetics Home Reference (NIH)SEC22A
Genomic and cartography
GoldenPath hg38 (UCSC)SEC22A  -     chr3:123201927-123274135 +  3q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC22A  -     3q21.1   [Description]    (hg19-Feb_2009)
EnsemblSEC22A - 3q21.1 [CytoView hg19]  SEC22A - 3q21.1 [CytoView hg38]
Mapping of homologs : NCBISEC22A [Mapview hg19]  SEC22A [Mapview hg38]
OMIM612442   
Gene and transcription
Genbank (Entrez)AF100749 AK057587 AK315771 BC007122 BG613364
RefSeq transcript (Entrez)NM_012430
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEC22A
Cluster EST : UnigeneHs.477361 [ NCBI ]
CGAP (NCI)Hs.477361
Alternative Splicing GalleryENSG00000121542
Gene ExpressionSEC22A [ NCBI-GEO ]   SEC22A [ EBI - ARRAY_EXPRESS ]   SEC22A [ SEEK ]   SEC22A [ MEM ]
Gene Expression Viewer (FireBrowse)SEC22A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26984
GTEX Portal (Tissue expression)SEC22A
Human Protein AtlasENSG00000121542-SEC22A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IW7
Splice isoforms : SwissVarQ96IW7
PhosPhoSitePlusQ96IW7
Domaine pattern : Prosite (Expaxy)LONGIN (PS50859)   
Domains : Interpro (EBI)Longin-like_dom    Longin_dom    Sec22a   
Domain families : Pfam (Sanger)Longin (PF13774)   
Domain families : Pfam (NCBI)pfam13774   
Domain families : Smart (EMBL)Longin (SM01270)  
Conserved Domain (NCBI)SEC22A
DMDM Disease mutations26984
Blocks (Seattle)SEC22A
SuperfamilyQ96IW7
Human Protein Atlas [tissue]ENSG00000121542-SEC22A [tissue]
Peptide AtlasQ96IW7
HPRD15313
IPIIPI00063881   IPI00945619   IPI00946829   IPI00946171   IPI00945975   IPI00945348   IPI00945210   IPI00790415   
Protein Interaction databases
DIP (DOE-UCLA)Q96IW7
IntAct (EBI)Q96IW7
FunCoupENSG00000121542
BioGRIDSEC22A
STRING (EMBL)SEC22A
ZODIACSEC22A
Ontologies - Pathways
QuickGOQ96IW7
Ontology : AmiGOSNARE binding  transporter activity  SNAP receptor activity  protein binding  endoplasmic reticulum membrane  exocytosis  ER to Golgi vesicle-mediated transport  protein transport  integral component of membrane  SNARE complex  vesicle fusion with Golgi apparatus  
Ontology : EGO-EBISNARE binding  transporter activity  SNAP receptor activity  protein binding  endoplasmic reticulum membrane  exocytosis  ER to Golgi vesicle-mediated transport  protein transport  integral component of membrane  SNARE complex  vesicle fusion with Golgi apparatus  
NDEx NetworkSEC22A
Atlas of Cancer Signalling NetworkSEC22A
Wikipedia pathwaysSEC22A
Orthology - Evolution
OrthoDB26984
GeneTree (enSembl)ENSG00000121542
Phylogenetic Trees/Animal Genes : TreeFamSEC22A
HOVERGENQ96IW7
HOGENOMQ96IW7
Homologs : HomoloGeneSEC22A
Homology/Alignments : Family Browser (UCSC)SEC22A
Gene fusions - Rearrangements
Tumor Fusion PortalSEC22A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC22A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC22A
dbVarSEC22A
ClinVarSEC22A
1000_GenomesSEC22A 
Exome Variant ServerSEC22A
ExAC (Exome Aggregation Consortium)ENSG00000121542
GNOMAD BrowserENSG00000121542
Genetic variants : HAPMAP26984
Genomic Variants (DGV)SEC22A [DGVbeta]
DECIPHERSEC22A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC22A 
Mutations
ICGC Data PortalSEC22A 
TCGA Data PortalSEC22A 
Broad Tumor PortalSEC22A
OASIS PortalSEC22A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC22A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEC22A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC22A
DgiDB (Drug Gene Interaction Database)SEC22A
DoCM (Curated mutations)SEC22A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC22A (select a term)
intoGenSEC22A
Cancer3DSEC22A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612442   
Orphanet
DisGeNETSEC22A
MedgenSEC22A
Genetic Testing Registry SEC22A
NextProtQ96IW7 [Medical]
TSGene26984
GENETestsSEC22A
Target ValidationSEC22A
Huge Navigator SEC22A [HugePedia]
snp3D : Map Gene to Disease26984
BioCentury BCIQSEC22A
ClinGenSEC22A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26984
Chemical/Pharm GKB GenePA134921956
Clinical trialSEC22A
Miscellaneous
canSAR (ICR)SEC22A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC22A
EVEXSEC22A
GoPubMedSEC22A
iHOPSEC22A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:33:51 CET 2017

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