Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SEC22C (SEC22 homolog C, vesicle trafficking protein)

Identity

Alias_namesSEC22L3
SEC22 vesicle trafficking protein-like 3 (S. cerevisiae)
SEC22 vesicle trafficking protein homolog C (S. cerevisiae)
Alias_symbol (synonym)MGC13261
MGC5373
Other alias
HGNC (Hugo) SEC22C
LocusID (NCBI) 9117
Atlas_Id 55999
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42547967 and ends at 42582028 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SEC22C (3p22.1) / COPB1 (11p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SEC22C   16828
Cards
Entrez_Gene (NCBI)SEC22C  9117  SEC22 homolog C, vesicle trafficking protein
AliasesSEC22L3
GeneCards (Weizmann)SEC22C
Ensembl hg19 (Hinxton)ENSG00000093183 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000093183 [Gene_View]  ENSG00000093183 [Sequence]  chr3:42547967-42582028 [Contig_View]  SEC22C [Vega]
ICGC DataPortalENSG00000093183
TCGA cBioPortalSEC22C
AceView (NCBI)SEC22C
Genatlas (Paris)SEC22C
WikiGenes9117
SOURCE (Princeton)SEC22C
Genetics Home Reference (NIH)SEC22C
Genomic and cartography
GoldenPath hg38 (UCSC)SEC22C  -     chr3:42547967-42582028 -  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC22C  -     3p22.1   [Description]    (hg19-Feb_2009)
GoldenPathSEC22C - 3p22.1 [CytoView hg19]  SEC22C - 3p22.1 [CytoView hg38]
ImmunoBaseENSG00000093183
Mapping of homologs : NCBISEC22C [Mapview hg19]  SEC22C [Mapview hg38]
OMIM604028   
Gene and transcription
Genbank (Entrez)AF039568 AK074576 AK292856 AK293133 AY359041
RefSeq transcript (Entrez)NM_001201572 NM_001201584 NM_004206 NM_032970
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEC22C
Cluster EST : UnigeneHs.445892 [ NCBI ]
CGAP (NCI)Hs.445892
Alternative Splicing GalleryENSG00000093183
Gene ExpressionSEC22C [ NCBI-GEO ]   SEC22C [ EBI - ARRAY_EXPRESS ]   SEC22C [ SEEK ]   SEC22C [ MEM ]
Gene Expression Viewer (FireBrowse)SEC22C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9117
GTEX Portal (Tissue expression)SEC22C
Human Protein AtlasENSG00000093183-SEC22C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRL7
Splice isoforms : SwissVarQ9BRL7
PhosPhoSitePlusQ9BRL7
Domaine pattern : Prosite (Expaxy)LONGIN (PS50859)   
Domains : Interpro (EBI)Longin-like_dom_sf    Longin_dom   
Domain families : Pfam (Sanger)Longin (PF13774)   
Domain families : Pfam (NCBI)pfam13774   
Domain families : Smart (EMBL)Longin (SM01270)  
Conserved Domain (NCBI)SEC22C
DMDM Disease mutations9117
Blocks (Seattle)SEC22C
SuperfamilyQ9BRL7
Human Protein Atlas [tissue]ENSG00000093183-SEC22C [tissue]
Peptide AtlasQ9BRL7
HPRD04938
IPIIPI00018318   IPI00003131   IPI00432010   IPI01012994   IPI00927456   IPI00927713   IPI00924817   IPI00924990   IPI00925211   IPI00789713   IPI00925379   IPI00926046   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRL7
IntAct (EBI)Q9BRL7
FunCoupENSG00000093183
BioGRIDSEC22C
STRING (EMBL)SEC22C
ZODIACSEC22C
Ontologies - Pathways
QuickGOQ9BRL7
Ontology : AmiGOprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  protein transport  integral component of membrane  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  protein transport  integral component of membrane  
NDEx NetworkSEC22C
Atlas of Cancer Signalling NetworkSEC22C
Wikipedia pathwaysSEC22C
Orthology - Evolution
OrthoDB9117
GeneTree (enSembl)ENSG00000093183
Phylogenetic Trees/Animal Genes : TreeFamSEC22C
HOGENOMQ9BRL7
Homologs : HomoloGeneSEC22C
Homology/Alignments : Family Browser (UCSC)SEC22C
Gene fusions - Rearrangements
Fusion : QuiverSEC22C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC22C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC22C
dbVarSEC22C
ClinVarSEC22C
1000_GenomesSEC22C 
Exome Variant ServerSEC22C
ExAC (Exome Aggregation Consortium)ENSG00000093183
GNOMAD BrowserENSG00000093183
Varsome BrowserSEC22C
Genetic variants : HAPMAP9117
Genomic Variants (DGV)SEC22C [DGVbeta]
DECIPHERSEC22C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC22C 
Mutations
ICGC Data PortalSEC22C 
TCGA Data PortalSEC22C 
Broad Tumor PortalSEC22C
OASIS PortalSEC22C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC22C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEC22C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC22C
DgiDB (Drug Gene Interaction Database)SEC22C
DoCM (Curated mutations)SEC22C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC22C (select a term)
intoGenSEC22C
Cancer3DSEC22C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604028   
Orphanet
DisGeNETSEC22C
MedgenSEC22C
Genetic Testing Registry SEC22C
NextProtQ9BRL7 [Medical]
TSGene9117
GENETestsSEC22C
Target ValidationSEC22C
Huge Navigator SEC22C [HugePedia]
snp3D : Map Gene to Disease9117
BioCentury BCIQSEC22C
ClinGenSEC22C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9117
Chemical/Pharm GKB GenePA134952972
Clinical trialSEC22C
Miscellaneous
canSAR (ICR)SEC22C (select the gene name)
DataMed IndexSEC22C
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC22C
EVEXSEC22C
GoPubMedSEC22C
iHOPSEC22C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 8 11:40:17 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.