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SEC23IP (SEC23 interacting protein)

Identity

Alias_symbol (synonym)p125
Other aliasMSTP053
P125
P125A
HGNC (Hugo) SEC23IP
LocusID (NCBI) 11196
Atlas_Id 73090
Location 10q26.11  [Link to chromosome band 10q26]
Location_base_pair Starts at 119892573 and ends at 119944658 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SEC23IP (10q26.11) / CFAP46 (10q26.3)SEC23IP (10q26.11) / SEC23IP (10q26.11)SEC23IP (10q26.11) / TESK2 (1p34.1)
SLC39A9 (14q24.1) / SEC23IP (10q26.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEC23IP   17018
Cards
Entrez_Gene (NCBI)SEC23IP  11196  SEC23 interacting protein
AliasesMSTP053; P125; P125A
GeneCards (Weizmann)SEC23IP
Ensembl hg19 (Hinxton)ENSG00000107651 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107651 [Gene_View]  chr10:119892573-119944658 [Contig_View]  SEC23IP [Vega]
ICGC DataPortalENSG00000107651
TCGA cBioPortalSEC23IP
AceView (NCBI)SEC23IP
Genatlas (Paris)SEC23IP
WikiGenes11196
SOURCE (Princeton)SEC23IP
Genetics Home Reference (NIH)SEC23IP
Genomic and cartography
GoldenPath hg38 (UCSC)SEC23IP  -     chr10:119892573-119944658 +  10q26.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC23IP  -     10q26.11   [Description]    (hg19-Feb_2009)
EnsemblSEC23IP - 10q26.11 [CytoView hg19]  SEC23IP - 10q26.11 [CytoView hg38]
Mapping of homologs : NCBISEC23IP [Mapview hg19]  SEC23IP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB019435 AF116723 AI093198 AK000698 AK001135
RefSeq transcript (Entrez)NM_007190
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEC23IP
Cluster EST : UnigeneHs.435004 [ NCBI ]
CGAP (NCI)Hs.435004
Alternative Splicing GalleryENSG00000107651
Gene ExpressionSEC23IP [ NCBI-GEO ]   SEC23IP [ EBI - ARRAY_EXPRESS ]   SEC23IP [ SEEK ]   SEC23IP [ MEM ]
Gene Expression Viewer (FireBrowse)SEC23IP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11196
GTEX Portal (Tissue expression)SEC23IP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6Y8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6Y8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6Y8
Splice isoforms : SwissVarQ9Y6Y8
PhosPhoSitePlusQ9Y6Y8
Domaine pattern : Prosite (Expaxy)DDHD (PS51043)   
Domains : Interpro (EBI)DDHD_dom    SAM    SAM/pointed   
Tomaif &amilies : Pfam (Sanger)DDHD (PF02862)    SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam02862    pfam00536   
Domain families : Smart (EMBL)DDHD (SM01127)  SAM (SM00454)  
Conserved Domain (NCBI)SEC23IP
DMDM Disease mutations11196
Blocks (Seattle)SEC23IP
SuperfamilyQ9Y6Y8
Human Protein AtlasENSG00000107651
Peptide AtlasQ9Y6Y8
HPRD07152
IPIIPI00026969   IPI00473012   IPI01011794   IPI00643072   IPI00641133   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6Y8
IntAct (EBI)Q9Y6Y8
FunCoupENSG00000107651
BioGRIDSEC23IP
STRING (EMBL)SEC23IP
ZODIACSEC23IP
Ontologies - Pathways
QuickGOQ9Y6Y8
Ontology : AmiGOGolgi membrane  RNA binding  phospholipase activity  protein binding  cytoplasm  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  Golgi organization  ER to Golgi transport vesicle membrane  ER to Golgi transport vesicle  ER to Golgi transport vesicle  intracellular membrane-bounded organelle  metal ion binding  COPII vesicle coating  
Ontology : EGO-EBIGolgi membrane  RNA binding  phospholipase activity  protein binding  cytoplasm  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  Golgi organization  ER to Golgi transport vesicle membrane  ER to Golgi transport vesicle  ER to Golgi transport vesicle  intracellular membrane-bounded organelle  metal ion binding  COPII vesicle coating  
NDEx NetworkSEC23IP
Atlas of Cancer Signalling NetworkSEC23IP
Wikipedia pathwaysSEC23IP
Orthology - Evolution
OrthoDB11196
GeneTree (enSembl)ENSG00000107651
Phylogenetic Trees/Animal Genes : TreeFamSEC23IP
HOVERGENQ9Y6Y8
HOGENOMQ9Y6Y8
Homologs : HomoloGeneSEC23IP
Homology/Alignments : Family Browser (UCSC)SEC23IP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC23IP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC23IP
dbVarSEC23IP
ClinVarSEC23IP
1000_GenomesSEC23IP 
Exome Variant ServerSEC23IP
ExAC (Exome Aggregation Consortium)SEC23IP (select the gene name)
Genetic variants : HAPMAP11196
Genomic Variants (DGV)SEC23IP [DGVbeta]
DECIPHERSEC23IP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC23IP 
Mutations
ICGC Data PortalSEC23IP 
TCGA Data PortalSEC23IP 
Broad Tumor PortalSEC23IP
OASIS PortalSEC23IP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC23IP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEC23IP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC23IP
DgiDB (Drug Gene Interaction Database)SEC23IP
DoCM (Curated mutations)SEC23IP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC23IP (select a term)
intoGenSEC23IP
Cancer3DSEC23IP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSEC23IP
Genetic Testing Registry SEC23IP
NextProtQ9Y6Y8 [Medical]
TSGene11196
GENETestsSEC23IP
Target ValidationSEC23IP
Huge Navigator SEC23IP [HugePedia]
snp3D : Map Gene to Disease11196
BioCentury BCIQSEC23IP
ClinGenSEC23IP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11196
Chemical/Pharm GKB GenePA134964657
Clinical trialSEC23IP
Miscellaneous
canSAR (ICR)SEC23IP (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC23IP
EVEXSEC23IP
GoPubMedSEC23IP
iHOPSEC23IP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:28 CEST 2017

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