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SEC23IP (SEC23 interacting protein)

Identity

Alias (NCBI)MSTP053
P125
P125A
iPLA1beta
HGNC (Hugo) SEC23IP
HGNC Alias symbp125
LocusID (NCBI) 11196
Atlas_Id 73090
Location 10q26.11  [Link to chromosome band 10q26]
Location_base_pair Starts at 119892730 and ends at 119944656 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SEC23IP (10q26.11) / CFAP46 (10q26.3)SEC23IP (10q26.11) / SEC23IP (10q26.11)SEC23IP (10q26.11) / TESK2 (1p34.1)
SLC39A9 (14q24.1) / SEC23IP (10q26.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SEC23IP   17018
Cards
Entrez_Gene (NCBI)SEC23IP    SEC23 interacting protein
AliasesMSTP053; P125; P125A; iPLA1beta
GeneCards (Weizmann)SEC23IP
Ensembl hg19 (Hinxton)ENSG00000107651 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107651 [Gene_View]  ENSG00000107651 [Sequence]  chr10:119892730-119944656 [Contig_View]  SEC23IP [Vega]
ICGC DataPortalENSG00000107651
TCGA cBioPortalSEC23IP
AceView (NCBI)SEC23IP
Genatlas (Paris)SEC23IP
SOURCE (Princeton)SEC23IP
Genetics Home Reference (NIH)SEC23IP
Genomic and cartography
GoldenPath hg38 (UCSC)SEC23IP  -     chr10:119892730-119944656 +  10q26.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC23IP  -     10q26.11   [Description]    (hg19-Feb_2009)
GoldenPathSEC23IP - 10q26.11 [CytoView hg19]  SEC23IP - 10q26.11 [CytoView hg38]
ImmunoBaseENSG00000107651
Genome Data Viewer NCBISEC23IP [Mapview hg19]  
OMIM617852   
Gene and transcription
Genbank (Entrez)AB019435 AF116723 AI093198 AK000698 AK001135
RefSeq transcript (Entrez)NM_007190
Consensus coding sequences : CCDS (NCBI)SEC23IP
Gene ExpressionSEC23IP [ NCBI-GEO ]   SEC23IP [ EBI - ARRAY_EXPRESS ]   SEC23IP [ SEEK ]   SEC23IP [ MEM ]
Gene Expression Viewer (FireBrowse)SEC23IP [ Firebrowse - Broad ]
GenevisibleExpression of SEC23IP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11196
GTEX Portal (Tissue expression)SEC23IP
Human Protein AtlasENSG00000107651-SEC23IP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6Y8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6Y8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6Y8
PhosPhoSitePlusQ9Y6Y8
Domaine pattern : Prosite (Expaxy)DDHD (PS51043)   
Domains : Interpro (EBI)DDHD_dom    SAM    SAM/pointed_sf    SEC23IP_SAM   
Domain families : Pfam (Sanger)DDHD (PF02862)    SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam02862    pfam00536   
Domain families : Smart (EMBL)DDHD (SM01127)  SAM (SM00454)  
Conserved Domain (NCBI)SEC23IP
SuperfamilyQ9Y6Y8
AlphaFold pdb e-kbQ9Y6Y8   
Human Protein Atlas [tissue]ENSG00000107651-SEC23IP [tissue]
HPRD07152
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6Y8
IntAct (EBI)Q9Y6Y8
BioGRIDSEC23IP
STRING (EMBL)SEC23IP
ZODIACSEC23IP
Ontologies - Pathways
QuickGOQ9Y6Y8
Ontology : AmiGORNA binding  phospholipase activity  protein binding  cytoplasm  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  cytosol  intracellular protein transport  Golgi organization  ER to Golgi transport vesicle membrane  COPII-coated ER to Golgi transport vesicle  COPII-coated ER to Golgi transport vesicle  intracellular membrane-bounded organelle  metal ion binding  COPII vesicle coating  
Ontology : EGO-EBIRNA binding  phospholipase activity  protein binding  cytoplasm  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  cytosol  intracellular protein transport  Golgi organization  ER to Golgi transport vesicle membrane  COPII-coated ER to Golgi transport vesicle  COPII-coated ER to Golgi transport vesicle  intracellular membrane-bounded organelle  metal ion binding  COPII vesicle coating  
NDEx NetworkSEC23IP
Atlas of Cancer Signalling NetworkSEC23IP
Wikipedia pathwaysSEC23IP
Orthology - Evolution
OrthoDB11196
GeneTree (enSembl)ENSG00000107651
Phylogenetic Trees/Animal Genes : TreeFamSEC23IP
Homologs : HomoloGeneSEC23IP
Homology/Alignments : Family Browser (UCSC)SEC23IP
Gene fusions - Rearrangements
Fusion : QuiverSEC23IP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC23IP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC23IP
dbVarSEC23IP
ClinVarSEC23IP
MonarchSEC23IP
1000_GenomesSEC23IP 
Exome Variant ServerSEC23IP
GNOMAD BrowserENSG00000107651
Varsome BrowserSEC23IP
ACMGSEC23IP variants
VarityQ9Y6Y8
Genomic Variants (DGV)SEC23IP [DGVbeta]
DECIPHERSEC23IP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC23IP 
Mutations
ICGC Data PortalSEC23IP 
TCGA Data PortalSEC23IP 
Broad Tumor PortalSEC23IP
OASIS PortalSEC23IP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC23IP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSEC23IP
Mutations and Diseases : HGMDSEC23IP
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSEC23IP
DgiDB (Drug Gene Interaction Database)SEC23IP
DoCM (Curated mutations)SEC23IP
CIViC (Clinical Interpretations of Variants in Cancer)SEC23IP
Cancer3DSEC23IP
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617852   
Orphanet
DisGeNETSEC23IP
MedgenSEC23IP
Genetic Testing Registry SEC23IP
NextProtQ9Y6Y8 [Medical]
GENETestsSEC23IP
Target ValidationSEC23IP
Huge Navigator SEC23IP [HugePedia]
ClinGenSEC23IP
Clinical trials, drugs, therapy
MyCancerGenomeSEC23IP
Protein Interactions : CTDSEC23IP
Pharm GKB GenePA134964657
PharosQ9Y6Y8
Clinical trialSEC23IP
Miscellaneous
canSAR (ICR)SEC23IP
HarmonizomeSEC23IP
DataMed IndexSEC23IP
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSEC23IP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:08 CEST 2021

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