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SEC24C (SEC24 homolog C, COPII coat complex component)

Identity

Alias (NCBI)-
HGNC (Hugo) SEC24C
HGNC Alias symbKIAA0079
HGNC Previous nameSEC24 (S. cerevisiae) related gene family, member C
 SEC24 family, member C (S. cerevisiae)
 SEC24 family member C
LocusID (NCBI) 9632
Atlas_Id 73094
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73744372 and ends at 73772161 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DHDDS (1p36.11) / SEC24C (10q22.2)FMNL2 (2q23.3) / SEC24C (10q22.2)RILPL1 (12q24.31) / SEC24C (10q22.2)
SEC24C (10q22.2) / SEC24C (10q22.2)SEC24C (10q22.2) / SEPT10 (2q13)VCL (10q22.2) / SEC24C (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SEC24C   10705
Cards
Entrez_Gene (NCBI)SEC24C    SEC24 homolog C, COPII coat complex component
Aliases
GeneCards (Weizmann)SEC24C
Ensembl hg19 (Hinxton)ENSG00000176986 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176986 [Gene_View]  ENSG00000176986 [Sequence]  chr10:73744372-73772161 [Contig_View]  SEC24C [Vega]
ICGC DataPortalENSG00000176986
TCGA cBioPortalSEC24C
AceView (NCBI)SEC24C
Genatlas (Paris)SEC24C
SOURCE (Princeton)SEC24C
Genetics Home Reference (NIH)SEC24C
Genomic and cartography
GoldenPath hg38 (UCSC)SEC24C  -     chr10:73744372-73772161 +  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC24C  -     10q22.2   [Description]    (hg19-Feb_2009)
GoldenPathSEC24C - 10q22.2 [CytoView hg19]  SEC24C - 10q22.2 [CytoView hg38]
ImmunoBaseENSG00000176986
Genome Data Viewer NCBISEC24C [Mapview hg19]  
OMIM607185   
Gene and transcription
Genbank (Entrez)AK098512 AK298598 AK299826 AK303085 AK309918
RefSeq transcript (Entrez)NM_004922 NM_198597
Consensus coding sequences : CCDS (NCBI)SEC24C
Gene ExpressionSEC24C [ NCBI-GEO ]   SEC24C [ EBI - ARRAY_EXPRESS ]   SEC24C [ SEEK ]   SEC24C [ MEM ]
Gene Expression Viewer (FireBrowse)SEC24C [ Firebrowse - Broad ]
GenevisibleExpression of SEC24C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9632
GTEX Portal (Tissue expression)SEC24C
Human Protein AtlasENSG00000176986-SEC24C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP53992   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP53992  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP53992
PhosPhoSitePlusP53992
Domains : Interpro (EBI)ADF-H/Gelsolin-like_dom_sf    Gelsolin-like_dom    Gelsolin-like_dom_sf    Sec23/24_helical_dom    Sec23/24_helical_dom_sf    Sec23/24_trunk_dom    Sec23_24_beta_S    Sec24-like_trunk_dom    vWFA_dom_sf    Znf_Sec23_Sec24    Znf_Sec23_Sec24_sf   
Domain families : Pfam (Sanger)Gelsolin (PF00626)    Sec23_BS (PF08033)    Sec23_helical (PF04815)    Sec23_trunk (PF04811)    zf-Sec23_Sec24 (PF04810)   
Domain families : Pfam (NCBI)pfam00626    pfam08033    pfam04815    pfam04811    pfam04810   
Conserved Domain (NCBI)SEC24C
PDB (RSDB)3EH2   
PDB Europe3EH2   
PDB (PDBSum)3EH2   
PDB (IMB)3EH2   
Structural Biology KnowledgeBase3EH2   
SCOP (Structural Classification of Proteins)3EH2   
CATH (Classification of proteins structures)3EH2   
SuperfamilyP53992
AlphaFold pdb e-kbP53992   
Human Protein Atlas [tissue]ENSG00000176986-SEC24C [tissue]
HPRD06217
Protein Interaction databases
DIP (DOE-UCLA)P53992
IntAct (EBI)P53992
BioGRIDSEC24C
STRING (EMBL)SEC24C
ZODIACSEC24C
Ontologies - Pathways
QuickGOP53992
Ontology : AmiGOSNARE binding  SNARE binding  in utero embryonic development  antigen processing and presentation of peptide antigen via MHC class I  protein binding  endoplasmic reticulum membrane  cytosol  cytosol  intracellular protein transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  zinc ion binding  zinc ion binding  ER to Golgi transport vesicle membrane  antigen processing and presentation of exogenous peptide antigen via MHC class II  COPII vesicle coat  COPII vesicle coat  COPII vesicle coat  COPII vesicle coating  endoplasmic reticulum exit site  COPII-coated vesicle cargo loading  COPII-coated vesicle cargo loading  
Ontology : EGO-EBISNARE binding  SNARE binding  in utero embryonic development  antigen processing and presentation of peptide antigen via MHC class I  protein binding  endoplasmic reticulum membrane  cytosol  cytosol  intracellular protein transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  zinc ion binding  zinc ion binding  ER to Golgi transport vesicle membrane  antigen processing and presentation of exogenous peptide antigen via MHC class II  COPII vesicle coat  COPII vesicle coat  COPII vesicle coat  COPII vesicle coating  endoplasmic reticulum exit site  COPII-coated vesicle cargo loading  COPII-coated vesicle cargo loading  
NDEx NetworkSEC24C
Atlas of Cancer Signalling NetworkSEC24C
Wikipedia pathwaysSEC24C
Orthology - Evolution
OrthoDB9632
GeneTree (enSembl)ENSG00000176986
Phylogenetic Trees/Animal Genes : TreeFamSEC24C
Homologs : HomoloGeneSEC24C
Homology/Alignments : Family Browser (UCSC)SEC24C
Gene fusions - Rearrangements
Fusion : QuiverSEC24C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC24C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC24C
dbVarSEC24C
ClinVarSEC24C
MonarchSEC24C
1000_GenomesSEC24C 
Exome Variant ServerSEC24C
GNOMAD BrowserENSG00000176986
Varsome BrowserSEC24C
ACMGSEC24C variants
VarityP53992
Genomic Variants (DGV)SEC24C [DGVbeta]
DECIPHERSEC24C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC24C 
Mutations
ICGC Data PortalSEC24C 
TCGA Data PortalSEC24C 
Broad Tumor PortalSEC24C
OASIS PortalSEC24C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC24C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSEC24C
Mutations and Diseases : HGMDSEC24C
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSEC24C
DgiDB (Drug Gene Interaction Database)SEC24C
DoCM (Curated mutations)SEC24C
CIViC (Clinical Interpretations of Variants in Cancer)SEC24C
Cancer3DSEC24C
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607185   
Orphanet126   
DisGeNETSEC24C
MedgenSEC24C
Genetic Testing Registry SEC24C
NextProtP53992 [Medical]
GENETestsSEC24C
Target ValidationSEC24C
Huge Navigator SEC24C [HugePedia]
ClinGenSEC24C
Clinical trials, drugs, therapy
MyCancerGenomeSEC24C
Protein Interactions : CTDSEC24C
Pharm GKB GenePA35628
PharosP53992
Clinical trialSEC24C
Miscellaneous
canSAR (ICR)SEC24C
HarmonizomeSEC24C
DataMed IndexSEC24C
Probes
Litterature
PubMed83 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSEC24C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:09 CEST 2021

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