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SEC24C (SEC24 homolog C, COPII coat complex component)

Identity

Alias_namesSEC24 (S. cerevisiae) related gene family, member C
SEC24 family, member C (S. cerevisiae)
SEC24 family member C
Alias_symbol (synonym)KIAA0079
Other alias-
HGNC (Hugo) SEC24C
LocusID (NCBI) 9632
Atlas_Id 73094
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73744373 and ends at 73772175 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DHDDS (1p36.11) / SEC24C (10q22.2)FMNL2 (2q23.3) / SEC24C (10q22.2)RILPL1 (12q24.31) / SEC24C (10q22.2)
SEC24C (10q22.2) / SEC24C (10q22.2)SEC24C (10q22.2) / SEPT10 (2q13)VCL (10q22.2) / SEC24C (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEC24C   10705
Cards
Entrez_Gene (NCBI)SEC24C  9632  SEC24 homolog C, COPII coat complex component
Aliases
GeneCards (Weizmann)SEC24C
Ensembl hg19 (Hinxton)ENSG00000176986 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176986 [Gene_View]  chr10:73744373-73772175 [Contig_View]  SEC24C [Vega]
ICGC DataPortalENSG00000176986
TCGA cBioPortalSEC24C
AceView (NCBI)SEC24C
Genatlas (Paris)SEC24C
WikiGenes9632
SOURCE (Princeton)SEC24C
Genetics Home Reference (NIH)SEC24C
Genomic and cartography
GoldenPath hg38 (UCSC)SEC24C  -     chr10:73744373-73772175 +  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC24C  -     10q22.2   [Description]    (hg19-Feb_2009)
EnsemblSEC24C - 10q22.2 [CytoView hg19]  SEC24C - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBISEC24C [Mapview hg19]  SEC24C [Mapview hg38]
OMIM607185   
Gene and transcription
Genbank (Entrez)AK098512 AK298598 AK299826 AK303085 AK309918
RefSeq transcript (Entrez)NM_004922 NM_198597
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEC24C
Cluster EST : UnigeneHs.81964 [ NCBI ]
CGAP (NCI)Hs.81964
Alternative Splicing GalleryENSG00000176986
Gene ExpressionSEC24C [ NCBI-GEO ]   SEC24C [ EBI - ARRAY_EXPRESS ]   SEC24C [ SEEK ]   SEC24C [ MEM ]
Gene Expression Viewer (FireBrowse)SEC24C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9632
GTEX Portal (Tissue expression)SEC24C
Protein : pattern, domain, 3D structure
UniProt/SwissProtP53992   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP53992  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP53992
Splice isoforms : SwissVarP53992
PhosPhoSitePlusP53992
Domains : Interpro (EBI)ADF-H/Gelsolin-like_dom    Gelsolin-like_dom    Sec23/24_helical_dom    Sec23/24_trunk_dom    Sec23_24_beta_S    VWF_A    Znf_Sec23_Sec24   
Domain families : Pfam (Sanger)Gelsolin (PF00626)    Sec23_BS (PF08033)    Sec23_helical (PF04815)    Sec23_trunk (PF04811)    zf-Sec23_Sec24 (PF04810)   
Domain families : Pfam (NCBI)pfam00626    pfam08033    pfam04815    pfam04811    pfam04810   
Conserved Domain (NCBI)SEC24C
DMDM Disease mutations9632
Blocks (Seattle)SEC24C
PDB (SRS)3EH2   
PDB (PDBSum)3EH2   
PDB (IMB)3EH2   
PDB (RSDB)3EH2   
Structural Biology KnowledgeBase3EH2   
SCOP (Structural Classification of Proteins)3EH2   
CATH (Classification of proteins structures)3EH2   
SuperfamilyP53992
Human Protein AtlasENSG00000176986
Peptide AtlasP53992
HPRD06217
IPIIPI00024661   IPI00909486   IPI01015489   IPI01011290   IPI00985293   
Protein Interaction databases
DIP (DOE-UCLA)P53992
IntAct (EBI)P53992
FunCoupENSG00000176986
BioGRIDSEC24C
STRING (EMBL)SEC24C
ZODIACSEC24C
Ontologies - Pathways
QuickGOP53992
Ontology : AmiGOGolgi membrane  in utero embryonic development  antigen processing and presentation of peptide antigen via MHC class I  molecular_function  protein binding  endoplasmic reticulum membrane  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  zinc ion binding  ER to Golgi transport vesicle membrane  antigen processing and presentation of exogenous peptide antigen via MHC class II  COPII vesicle coat  COPII vesicle coating  perinuclear region of cytoplasm  
Ontology : EGO-EBIGolgi membrane  in utero embryonic development  antigen processing and presentation of peptide antigen via MHC class I  molecular_function  protein binding  endoplasmic reticulum membrane  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  zinc ion binding  ER to Golgi transport vesicle membrane  antigen processing and presentation of exogenous peptide antigen via MHC class II  COPII vesicle coat  COPII vesicle coating  perinuclear region of cytoplasm  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkSEC24C
Atlas of Cancer Signalling NetworkSEC24C
Wikipedia pathwaysSEC24C
Orthology - Evolution
OrthoDB9632
GeneTree (enSembl)ENSG00000176986
Phylogenetic Trees/Animal Genes : TreeFamSEC24C
HOVERGENP53992
HOGENOMP53992
Homologs : HomoloGeneSEC24C
Homology/Alignments : Family Browser (UCSC)SEC24C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC24C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC24C
dbVarSEC24C
ClinVarSEC24C
1000_GenomesSEC24C 
Exome Variant ServerSEC24C
ExAC (Exome Aggregation Consortium)SEC24C (select the gene name)
Genetic variants : HAPMAP9632
Genomic Variants (DGV)SEC24C [DGVbeta]
DECIPHERSEC24C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC24C 
Mutations
ICGC Data PortalSEC24C 
TCGA Data PortalSEC24C 
Broad Tumor PortalSEC24C
OASIS PortalSEC24C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC24C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEC24C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC24C
DgiDB (Drug Gene Interaction Database)SEC24C
DoCM (Curated mutations)SEC24C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC24C (select a term)
intoGenSEC24C
Cancer3DSEC24C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607185   
Orphanet126   
MedgenSEC24C
Genetic Testing Registry SEC24C
NextProtP53992 [Medical]
TSGene9632
GENETestsSEC24C
Target ValidationSEC24C
Huge Navigator SEC24C [HugePedia]
snp3D : Map Gene to Disease9632
BioCentury BCIQSEC24C
ClinGenSEC24C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9632
Chemical/Pharm GKB GenePA35628
Clinical trialSEC24C
Miscellaneous
canSAR (ICR)SEC24C (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC24C
EVEXSEC24C
GoPubMedSEC24C
iHOPSEC24C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:28 CEST 2017

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