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SEC24D (SEC24 homolog D, COPII coat complex component)

Identity

Alias (NCBI)CLCRP2
HGNC (Hugo) SEC24D
HGNC Alias symbKIAA0755
HGNC Previous nameSEC24 (S. cerevisiae) related gene family, member D
 SEC24 family, member D (S. cerevisiae)
 SEC24 family member D
LocusID (NCBI) 9871
Atlas_Id 73095
Location 4q26  [Link to chromosome band 4q26]
Location_base_pair Starts at 118722823 and ends at 118836126 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SEC24D (4q26)::CFI (4q25)SEC24D (4q26)::PLRG1 (4q31.3)SEC24D (4q26)::RP11-455G16.1 ()
SEC24D (4q26)::TPM3 (1q21.3)TPM3 (1q21.3)::SEC24D (4q26)SEC24D CFI
SEC24D PLRG1SEC24D RP11-455G16.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SEC24D   10706
Cards
Entrez_Gene (NCBI)SEC24D    SEC24 homolog D, COPII coat complex component
AliasesCLCRP2
GeneCards (Weizmann)SEC24D
Ensembl hg19 (Hinxton)ENSG00000150961 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150961 [Gene_View]  ENSG00000150961 [Sequence]  chr4:118722823-118836126 [Contig_View]  SEC24D [Vega]
ICGC DataPortalENSG00000150961
TCGA cBioPortalSEC24D
AceView (NCBI)SEC24D
Genatlas (Paris)SEC24D
SOURCE (Princeton)SEC24D
Genetics Home Reference (NIH)SEC24D
Genomic and cartography
GoldenPath hg38 (UCSC)SEC24D  -     chr4:118722823-118836126 -  4q26   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC24D  -     4q26   [Description]    (hg19-Feb_2009)
GoldenPathSEC24D - 4q26 [CytoView hg19]  SEC24D - 4q26 [CytoView hg38]
ImmunoBaseENSG00000150961
Genome Data Viewer NCBISEC24D [Mapview hg19]  
OMIM607186   616294   
Gene and transcription
Genbank (Entrez)AB018298 AF130464 AK000709 AK001390 AK125962
RefSeq transcript (Entrez)NM_001318066 NM_014822
Consensus coding sequences : CCDS (NCBI)SEC24D
Gene ExpressionSEC24D [ NCBI-GEO ]   SEC24D [ EBI - ARRAY_EXPRESS ]   SEC24D [ SEEK ]   SEC24D [ MEM ]
Gene Expression Viewer (FireBrowse)SEC24D [ Firebrowse - Broad ]
GenevisibleExpression of SEC24D in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9871
GTEX Portal (Tissue expression)SEC24D
Human Protein AtlasENSG00000150961-SEC24D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94855   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94855  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94855
PhosPhoSitePlusO94855
Domains : Interpro (EBI)ADF-H/Gelsolin-like_dom_sf    Gelsolin-like_dom    Gelsolin-like_dom_sf    Sec23/24_helical_dom    Sec23/24_helical_dom_sf    Sec23/24_trunk_dom    Sec23_24_beta_S    Sec24-like_trunk_dom    vWFA_dom_sf    Znf_Sec23_Sec24   
Domain families : Pfam (Sanger)Gelsolin (PF00626)    Sec23_BS (PF08033)    Sec23_helical (PF04815)    Sec23_trunk (PF04811)    zf-Sec23_Sec24 (PF04810)   
Domain families : Pfam (NCBI)pfam00626    pfam08033    pfam04815    pfam04811    pfam04810   
Conserved Domain (NCBI)SEC24D
PDB (RSDB)3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
PDB Europe3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
PDB (PDBSum)3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
PDB (IMB)3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
Structural Biology KnowledgeBase3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
SCOP (Structural Classification of Proteins)3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
CATH (Classification of proteins structures)3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
SuperfamilyO94855
AlphaFold pdb e-kbO94855   
Human Protein Atlas [tissue]ENSG00000150961-SEC24D [tissue]
HPRD06218
Protein Interaction databases
DIP (DOE-UCLA)O94855
IntAct (EBI)O94855
BioGRIDSEC24D
STRING (EMBL)SEC24D
ZODIACSEC24D
Ontologies - Pathways
QuickGOO94855
Ontology : AmiGOSNARE binding  SNARE binding  in utero embryonic development  antigen processing and presentation of peptide antigen via MHC class I  protein binding  endoplasmic reticulum membrane  cytosol  intracellular protein transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  zinc ion binding  zinc ion binding  ER to Golgi transport vesicle membrane  antigen processing and presentation of exogenous peptide antigen via MHC class II  COPII vesicle coat  COPII vesicle coat  COPII vesicle coat  intracellular membrane-bounded organelle  COPII vesicle coating  endoplasmic reticulum exit site  COPII-coated vesicle cargo loading  COPII-coated vesicle cargo loading  
Ontology : EGO-EBISNARE binding  SNARE binding  in utero embryonic development  antigen processing and presentation of peptide antigen via MHC class I  protein binding  endoplasmic reticulum membrane  cytosol  intracellular protein transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  zinc ion binding  zinc ion binding  ER to Golgi transport vesicle membrane  antigen processing and presentation of exogenous peptide antigen via MHC class II  COPII vesicle coat  COPII vesicle coat  COPII vesicle coat  intracellular membrane-bounded organelle  COPII vesicle coating  endoplasmic reticulum exit site  COPII-coated vesicle cargo loading  COPII-coated vesicle cargo loading  
NDEx NetworkSEC24D
Atlas of Cancer Signalling NetworkSEC24D
Wikipedia pathwaysSEC24D
Orthology - Evolution
OrthoDB9871
GeneTree (enSembl)ENSG00000150961
Phylogenetic Trees/Animal Genes : TreeFamSEC24D
Homologs : HomoloGeneSEC24D
Homology/Alignments : Family Browser (UCSC)SEC24D
Gene fusions - Rearrangements
Fusion : QuiverSEC24D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC24D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC24D
dbVarSEC24D
ClinVarSEC24D
MonarchSEC24D
1000_GenomesSEC24D 
Exome Variant ServerSEC24D
GNOMAD BrowserENSG00000150961
Varsome BrowserSEC24D
ACMGSEC24D variants
VarityO94855
Genomic Variants (DGV)SEC24D [DGVbeta]
DECIPHERSEC24D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC24D 
Mutations
ICGC Data PortalSEC24D 
TCGA Data PortalSEC24D 
Broad Tumor PortalSEC24D
OASIS PortalSEC24D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC24D  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSEC24D
Mutations and Diseases : HGMDSEC24D
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSEC24D
DgiDB (Drug Gene Interaction Database)SEC24D
DoCM (Curated mutations)SEC24D
CIViC (Clinical Interpretations of Variants in Cancer)SEC24D
Cancer3DSEC24D
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607186    616294   
Orphanet1971   
DisGeNETSEC24D
MedgenSEC24D
Genetic Testing Registry SEC24D
NextProtO94855 [Medical]
GENETestsSEC24D
Target ValidationSEC24D
Huge Navigator SEC24D [HugePedia]
ClinGenSEC24D
Clinical trials, drugs, therapy
MyCancerGenomeSEC24D
Protein Interactions : CTDSEC24D
Pharm GKB GenePA35629
PharosO94855
Clinical trialSEC24D
Miscellaneous
canSAR (ICR)SEC24D
HarmonizomeSEC24D
ARCHS4SEC24D
DataMed IndexSEC24D
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSEC24D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:49:57 CET 2022

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