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SEC24D (SEC24 homolog D, COPII coat complex component)

Identity

Alias_namesSEC24 (S. cerevisiae) related gene family, member D
SEC24 family, member D (S. cerevisiae)
SEC24 family member D
Alias_symbol (synonym)KIAA0755
Other aliasCLCRP2
HGNC (Hugo) SEC24D
LocusID (NCBI) 9871
Atlas_Id 73095
Location 4q26  [Link to chromosome band 4q26]
Location_base_pair Starts at 118722823 and ends at 118836196 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SEC24D (4q26) / CFI (4q25)SEC24D (4q26) / PLRG1 (4q31.3)SEC24D (4q26) / RP11-455G16.1 ()
SEC24D (4q26) / TPM3 (1q21.3)TPM3 (1q21.3) / SEC24D (4q26)SEC24D CFI
SEC24D PLRG1SEC24D RP11-455G16.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEC24D   10706
Cards
Entrez_Gene (NCBI)SEC24D  9871  SEC24 homolog D, COPII coat complex component
AliasesCLCRP2
GeneCards (Weizmann)SEC24D
Ensembl hg19 (Hinxton)ENSG00000150961 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150961 [Gene_View]  chr4:118722823-118836196 [Contig_View]  SEC24D [Vega]
ICGC DataPortalENSG00000150961
TCGA cBioPortalSEC24D
AceView (NCBI)SEC24D
Genatlas (Paris)SEC24D
WikiGenes9871
SOURCE (Princeton)SEC24D
Genetics Home Reference (NIH)SEC24D
Genomic and cartography
GoldenPath hg38 (UCSC)SEC24D  -     chr4:118722823-118836196 -  4q26   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC24D  -     4q26   [Description]    (hg19-Feb_2009)
EnsemblSEC24D - 4q26 [CytoView hg19]  SEC24D - 4q26 [CytoView hg38]
Mapping of homologs : NCBISEC24D [Mapview hg19]  SEC24D [Mapview hg38]
OMIM607186   616294   
Gene and transcription
Genbank (Entrez)AB018298 AF130464 AK000709 AK001390 AK125962
RefSeq transcript (Entrez)NM_001318066 NM_014822
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEC24D
Cluster EST : UnigeneHs.189641 [ NCBI ]
CGAP (NCI)Hs.189641
Alternative Splicing GalleryENSG00000150961
Gene ExpressionSEC24D [ NCBI-GEO ]   SEC24D [ EBI - ARRAY_EXPRESS ]   SEC24D [ SEEK ]   SEC24D [ MEM ]
Gene Expression Viewer (FireBrowse)SEC24D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9871
GTEX Portal (Tissue expression)SEC24D
Human Protein AtlasENSG00000150961-SEC24D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94855   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94855  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94855
Splice isoforms : SwissVarO94855
PhosPhoSitePlusO94855
Domains : Interpro (EBI)ADF-H/Gelsolin-like_dom    Gelsolin-like_dom    Sec23/24_helical_dom    Sec23/24_trunk_dom    Sec23_24_beta_S    VWF_A    Znf_Sec23_Sec24   
Domain families : Pfam (Sanger)Gelsolin (PF00626)    Sec23_BS (PF08033)    Sec23_helical (PF04815)    Sec23_trunk (PF04811)    zf-Sec23_Sec24 (PF04810)   
Domain families : Pfam (NCBI)pfam00626    pfam08033    pfam04815    pfam04811    pfam04810   
Conserved Domain (NCBI)SEC24D
DMDM Disease mutations9871
Blocks (Seattle)SEC24D
PDB (SRS)3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
PDB (PDBSum)3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
PDB (IMB)3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
PDB (RSDB)3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
Structural Biology KnowledgeBase3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
SCOP (Structural Classification of Proteins)3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
CATH (Classification of proteins structures)3EFO    3EG9    5KYU    5KYW    5KYX    5KYY   
SuperfamilyO94855
Human Protein Atlas [tissue]ENSG00000150961-SEC24D [tissue]
Peptide AtlasO94855
HPRD06218
IPIIPI00747830   IPI00218288   IPI00386038   IPI00964975   IPI00909868   IPI00966967   IPI00964311   IPI00965746   
Protein Interaction databases
DIP (DOE-UCLA)O94855
IntAct (EBI)O94855
FunCoupENSG00000150961
BioGRIDSEC24D
STRING (EMBL)SEC24D
ZODIACSEC24D
Ontologies - Pathways
QuickGOO94855
Ontology : AmiGOGolgi membrane  in utero embryonic development  antigen processing and presentation of peptide antigen via MHC class I  molecular_function  protein binding  endoplasmic reticulum membrane  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  zinc ion binding  ER to Golgi transport vesicle membrane  antigen processing and presentation of exogenous peptide antigen via MHC class II  COPII vesicle coat  COPII vesicle coating  perinuclear region of cytoplasm  
Ontology : EGO-EBIGolgi membrane  in utero embryonic development  antigen processing and presentation of peptide antigen via MHC class I  molecular_function  protein binding  endoplasmic reticulum membrane  cytosol  intracellular protein transport  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  zinc ion binding  ER to Golgi transport vesicle membrane  antigen processing and presentation of exogenous peptide antigen via MHC class II  COPII vesicle coat  COPII vesicle coating  perinuclear region of cytoplasm  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkSEC24D
Atlas of Cancer Signalling NetworkSEC24D
Wikipedia pathwaysSEC24D
Orthology - Evolution
OrthoDB9871
GeneTree (enSembl)ENSG00000150961
Phylogenetic Trees/Animal Genes : TreeFamSEC24D
HOVERGENO94855
HOGENOMO94855
Homologs : HomoloGeneSEC24D
Homology/Alignments : Family Browser (UCSC)SEC24D
Gene fusions - Rearrangements
Fusion: TCGA_MDACCSEC24D CFI
Fusion: TCGA_MDACCSEC24D PLRG1
Fusion: TCGA_MDACCSEC24D RP11-455G16.1
Tumor Fusion PortalSEC24D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC24D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC24D
dbVarSEC24D
ClinVarSEC24D
1000_GenomesSEC24D 
Exome Variant ServerSEC24D
ExAC (Exome Aggregation Consortium)ENSG00000150961
GNOMAD BrowserENSG00000150961
Genetic variants : HAPMAP9871
Genomic Variants (DGV)SEC24D [DGVbeta]
DECIPHERSEC24D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC24D 
Mutations
ICGC Data PortalSEC24D 
TCGA Data PortalSEC24D 
Broad Tumor PortalSEC24D
OASIS PortalSEC24D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC24D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEC24D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC24D
DgiDB (Drug Gene Interaction Database)SEC24D
DoCM (Curated mutations)SEC24D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC24D (select a term)
intoGenSEC24D
Cancer3DSEC24D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607186    616294   
Orphanet1971   
DisGeNETSEC24D
MedgenSEC24D
Genetic Testing Registry SEC24D
NextProtO94855 [Medical]
TSGene9871
GENETestsSEC24D
Target ValidationSEC24D
Huge Navigator SEC24D [HugePedia]
snp3D : Map Gene to Disease9871
BioCentury BCIQSEC24D
ClinGenSEC24D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9871
Chemical/Pharm GKB GenePA35629
Clinical trialSEC24D
Miscellaneous
canSAR (ICR)SEC24D (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC24D
EVEXSEC24D
GoPubMedSEC24D
iHOPSEC24D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:10:51 CET 2017

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