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SEC31A (SEC31 homolog A (S. cerevisiae))

Identity

Other namesABP125
ABP130
HSPC334
SEC31L1
HGNC (Hugo) SEC31A
LocusID (NCBI) 22872
Location 4q21.22
Location_base_pair Starts at 83739814 and ends at 83812412 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SEC31A   17052
Entrez_Gene (NCBI)SEC31A  22872  SEC31 homolog A (S. cerevisiae)
Cards
GeneCards (Weizmann)SEC31A
Ensembl (Hinxton)ENSG00000138674 [Gene_View]  chr4:83739814-83812412 [Contig_View]  SEC31A [Vega]
AceView (NCBI)SEC31A
Genatlas (Paris)SEC31A
SOURCE (Stanford)NM_001077206 NM_001077207 NM_001077208 NM_001191049 NM_014933 NM_016211
Genomic and cartography
GoldenPath (UCSC)SEC31A  -  4q21.22   chr4:83739814-83812412 -  4q21.22   [Description]    (hg19-Feb_2009)
EnsemblSEC31A - 4q21.22 [CytoView]
Mapping of homologs : NCBISEC31A [Mapview]
OMIM610257   
Gene and transcription
Genbank (Entrez)AB018358 AB018359 AB020712 AF139184 AF161393
RefSeq transcript (SRS)NM_001077206 NM_001077207 NM_001077208 NM_001191049 NM_014933 NM_016211
RefSeq transcript (Entrez)NM_001077206 NM_001077207 NM_001077208 NM_001191049 NM_014933 NM_016211
RefSeq genomic (SRS)AC_000136 NC_000004 NC_018915 NG_029569 NT_016354 NW_001838915 NW_004078021
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_029569 NT_016354 NW_001838915 NW_004078021
Consensus coding sequences : CCDS (NCBI)SEC31A
Cluster EST : UnigeneHs.370024 [ SRS ] Hs.370024 [ NCBI ]
CGAP (NCI)Hs.370024
Alternative Splicing : Fast-db (Paris)GSHG0023370
Alternative Splicing GalleryENSG00000138674
Gene ExpressionSEC31A [ NCBI-GEO ]   SEC31A [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94979 (SRS) O94979 (Uniprot)
NextProtO94979
With graphics : InterProO94979
Splice isoforms : SwissVarO94979(Swissvar)
Domaine pattern : Prosite (SRS)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (SRS)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Related proteins : CluSTrO94979
Domain families : Pfam (SRS)WD40 (PF00400)   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
DMDM22872
Blocks (Seattle)O94979
Human Protein AtlasENSG00000138674
HPRD15314
IPIIPI00746182   IPI00795507   IPI00305152   IPI00515103   IPI00853220   IPI00445429   IPI00966405   IPI00853290   IPI00965360   IPI00965105   IPI00966669   IPI00965862   IPI00967743   IPI00964833   IPI00964293   IPI00967422   IPI00968144   IPI01022914   IPI00965367   IPI00964020   IPI00964547   IPI00966648   IPI00966964   IPI00967493   
Protein Interaction databases
DIP (DOE-UCLA)O94979
IntAct (EBI)O94979
FunCoupENSG00000138674
REACTOMESEC31A
Protein Interaction Database22872
BioGRIDSEC31A
InParanoidO94979
Interologous Interaction database O94979
IntegromeDBSEC31A
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SEC31A
SNP (GeneSNP Utah)SEC31A
SNP : HGBaseSEC31A
Genetic variants : HAPMAPSEC31A
Somatic Mutations in Cancer : COSMICSEC31A 
CONAN: Copy Number AnalysisSEC31A 
Rearrangement : COSMICSEC31A [4q21.22]  -  ALK [2p23.2]
Rearrangement : COSMICSEC31A [4q21.22]  -  JAK2 [9p24.1]
Translocation Breakpoints in Cancer : TICdbSEC31A 
Mutations and Diseases : HGMDSEC31A
OMIM610257   
GENETests610257   
Disease Genetic AssociationSEC31A
Huge Navigator SEC31A [HugePedia]  SEC31A [HugeCancerGEM]
Genomic VariantsSEC31A  SEC31A [DGVbeta]
snp3D : Map Gene to Disease22872
General knowledge
Homologs : HomoloGeneSEC31A
Homology/Alignments : Family Browser (UCSC)SEC31A
Phylogenetic Trees/Animal Genes : TreeFamSEC31A
Chemical/Protein Interactions : CTD22872
Chemical/Pharm GKB GenePA162402737
Clinical trialSEC31A
Cancer Resource (Charite)ENSG00000138674
Ontology : AmiGOantigen processing and presentation of peptide antigen via MHC class I  protein binding  cytoplasm  endosome  endoplasmic reticulum  endoplasmic reticulum membrane  cytosol  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  activation of signaling protein activity involved in unfolded protein response  ER to Golgi transport vesicle membrane  protein transport  cellular membrane organization  protein N-linked glycosylation via asparagine  antigen processing and presentation of exogenous peptide antigen via MHC class II  COPII vesicle coat  ER to Golgi transport vesicle  endoplasmic reticulum unfolded protein response  intracellular membrane-bounded organelle  post-translational protein modification  cellular protein metabolic process  COPII vesicle coating  calcium-dependent protein binding  perinuclear region of cytoplasm  response to calcium ion  
Ontology : EGO-EBIantigen processing and presentation of peptide antigen via MHC class I  protein binding  cytoplasm  endosome  endoplasmic reticulum  endoplasmic reticulum membrane  cytosol  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  activation of signaling protein activity involved in unfolded protein response  ER to Golgi transport vesicle membrane  protein transport  cellular membrane organization  protein N-linked glycosylation via asparagine  antigen processing and presentation of exogenous peptide antigen via MHC class II  COPII vesicle coat  ER to Golgi transport vesicle  endoplasmic reticulum unfolded protein response  intracellular membrane-bounded organelle  post-translational protein modification  cellular protein metabolic process  COPII vesicle coating  calcium-dependent protein binding  perinuclear region of cytoplasm  response to calcium ion  
Other databases
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
PubGeneSEC31A
iHOPSEC31A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:25:53 CEST 2013
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