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SEC31A (SEC31 homolog A, COPII coat complex component)

Identity

Alias (NCBI)ABP125
ABP130
HSPC275
HSPC334
NEDSOSB
SEC31L1
HGNC (Hugo) SEC31A
HGNC Alias symbKIAA0905
ABP125
ABP130
HGNC Previous nameSEC31L1
HGNC Previous nameSEC31-like 1 (S. cerevisiae)
 Sec31 homolog A (S. cerevisiae)
 SEC31 homolog A (S. cerevisiae)
LocusID (NCBI) 22872
Atlas_Id 42237
Location 4q21.22  [Link to chromosome band 4q21]
Location_base_pair Starts at 82818509 and ends at 82891280 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD101 (1p13.1) / SEC31A (4q21.22)CTPS2 (Xp22.2) / SEC31A (4q21.22)JADE2 (5q31.1) / SEC31A (4q21.22)
MTA3 (2p21) / SEC31A (4q21.22)SEC31A (4q21.22) / ALK (2p23.2)SEC31A (4q21.22) / ARFGAP1 (20q13.33)
SEC31A (4q21.22) / ARPC5 (1q25.3)SEC31A (4q21.22) / BCKDHB (6q14.1)SEC31A (4q21.22) / C6orf62 (6p22.3)
SEC31A (4q21.22) / FUBP1 (1p31.1)SEC31A (4q21.22) / JAK2 (9p24.1)SEC31A (4q21.22) / LRCH4 (7q22.1)
SEC31A (4q21.22) / MEMO1 (2p23.1)SEC31A (4q21.22) / MUC7 (4q13.3)SEC31A (4q21.22) / PPP2R2C (4p16.1)
SEC31A (4q21.22) / PTEN (10q23.31)SEC31A (4q21.22) / SEC31A (4q21.22)SMC1A (Xp11.22) / SEC31A (4q21.22)
SEC31A 4q21.22 / JAK2 9p24.1SEC31A 4q21.22 / MUC7 4q13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 4 ]
  ALK -positive diffuse large B-cell lymphoma
t(4;9)(q21.22;p24) SEC31A/JAK2
t(2;4)(p23;q21) SEC31A/ALK
t(4;12)(q21;q13) KMT2D/SEC31A

External links

Nomenclature
HGNC (Hugo)SEC31A   17052
Cards
Entrez_Gene (NCBI)SEC31A    SEC31 homolog A, COPII coat complex component
AliasesABP125; ABP130; HSPC275; HSPC334; 
NEDSOSB; SEC31L1
GeneCards (Weizmann)SEC31A
Ensembl hg19 (Hinxton)ENSG00000138674 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138674 [Gene_View]  ENSG00000138674 [Sequence]  chr4:82818509-82891280 [Contig_View]  SEC31A [Vega]
ICGC DataPortalENSG00000138674
TCGA cBioPortalSEC31A
AceView (NCBI)SEC31A
Genatlas (Paris)SEC31A
SOURCE (Princeton)SEC31A
Genetics Home Reference (NIH)SEC31A
Genomic and cartography
GoldenPath hg38 (UCSC)SEC31A  -     chr4:82818509-82891280 -  4q21.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC31A  -     4q21.22   [Description]    (hg19-Feb_2009)
GoldenPathSEC31A - 4q21.22 [CytoView hg19]  SEC31A - 4q21.22 [CytoView hg38]
ImmunoBaseENSG00000138674
Genome Data Viewer NCBISEC31A [Mapview hg19]  
OMIM610257   618651   
Gene and transcription
Genbank (Entrez)AB018358 AB018359 AB020712 AF139184 AF161393
RefSeq transcript (Entrez)NM_001077206 NM_001077207 NM_001077208 NM_001191049 NM_001300744 NM_001300745 NM_001318119 NM_001318120 NM_014933 NM_016211
Consensus coding sequences : CCDS (NCBI)SEC31A
Gene ExpressionSEC31A [ NCBI-GEO ]   SEC31A [ EBI - ARRAY_EXPRESS ]   SEC31A [ SEEK ]   SEC31A [ MEM ]
Gene Expression Viewer (FireBrowse)SEC31A [ Firebrowse - Broad ]
GenevisibleExpression of SEC31A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22872
GTEX Portal (Tissue expression)SEC31A
Human Protein AtlasENSG00000138674-SEC31A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SEC31A
Human Protein Atlas [tissue]ENSG00000138674-SEC31A [tissue]
HPRD15314
Protein Interaction databases
BioGRIDSEC31A
STRING (EMBL)SEC31A
ZODIACSEC31A
Ontologies - Pathways
Litterature
PubMed94 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSEC31A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:30:25 CEST 2021
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