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SEC31B (SEC31 homolog B, COPII coat complex component)

Identity

Alias (NCBI)SEC31B-1
SEC31L2
HGNC (Hugo) SEC31B
HGNC Alias symbSEC31B-1
DKFZP434M183
HGNC Previous nameSEC31L2
HGNC Previous nameSEC31-like 2 (S. cerevisiae)
 SEC31 homolog B (S. cerevisiae)
LocusID (NCBI) 25956
Atlas_Id 73096
Location 10q24.31  [Link to chromosome band 10q24]
Location_base_pair Starts at 100486647 and ends at 100519861 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
JMJD1C (10q21.3) / SEC31B (10q24.31)MYH14 (19q13.33) / SEC31B (10q24.31)SGIP1 (1p31.3) / SEC31B (10q24.31)
TUBD1 (17q23.1) / SEC31B (10q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SEC31B   23197
Cards
Entrez_Gene (NCBI)SEC31B    SEC31 homolog B, COPII coat complex component
AliasesSEC31B-1; SEC31L2
GeneCards (Weizmann)SEC31B
Ensembl hg19 (Hinxton)ENSG00000075826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075826 [Gene_View]  ENSG00000075826 [Sequence]  chr10:100486647-100519861 [Contig_View]  SEC31B [Vega]
ICGC DataPortalENSG00000075826
TCGA cBioPortalSEC31B
AceView (NCBI)SEC31B
Genatlas (Paris)SEC31B
SOURCE (Princeton)SEC31B
Genetics Home Reference (NIH)SEC31B
Genomic and cartography
GoldenPath hg38 (UCSC)SEC31B  -     chr10:100486647-100519861 -  10q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC31B  -     10q24.31   [Description]    (hg19-Feb_2009)
GoldenPathSEC31B - 10q24.31 [CytoView hg19]  SEC31B - 10q24.31 [CytoView hg38]
ImmunoBaseENSG00000075826
Genome Data Viewer NCBISEC31B [Mapview hg19]  
OMIM610258   
Gene and transcription
Genbank (Entrez)AF274863 AF279139 AK093637 AK098002 AK128343
RefSeq transcript (Entrez)NM_015490 NM_198138
Consensus coding sequences : CCDS (NCBI)SEC31B
Gene ExpressionSEC31B [ NCBI-GEO ]   SEC31B [ EBI - ARRAY_EXPRESS ]   SEC31B [ SEEK ]   SEC31B [ MEM ]
Gene Expression Viewer (FireBrowse)SEC31B [ Firebrowse - Broad ]
GenevisibleExpression of SEC31B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25956
GTEX Portal (Tissue expression)SEC31B
Human Protein AtlasENSG00000075826-SEC31B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQW1
PhosPhoSitePlusQ9NQW1
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)SEC31-like    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)SEC31B
SuperfamilyQ9NQW1
AlphaFold pdb e-kbQ9NQW1   
Human Protein Atlas [tissue]ENSG00000075826-SEC31B [tissue]
HPRD15315
Protein Interaction databases
DIP (DOE-UCLA)Q9NQW1
IntAct (EBI)Q9NQW1
BioGRIDSEC31B
STRING (EMBL)SEC31B
ZODIACSEC31B
Ontologies - Pathways
QuickGOQ9NQW1
Ontology : AmiGOstructural molecule activity  endoplasmic reticulum membrane  intracellular protein transport  endoplasmic reticulum organization  vesicle coat  COPII vesicle coat  endoplasmic reticulum exit site  COPII-coated vesicle cargo loading  
Ontology : EGO-EBIstructural molecule activity  endoplasmic reticulum membrane  intracellular protein transport  endoplasmic reticulum organization  vesicle coat  COPII vesicle coat  endoplasmic reticulum exit site  COPII-coated vesicle cargo loading  
NDEx NetworkSEC31B
Atlas of Cancer Signalling NetworkSEC31B
Wikipedia pathwaysSEC31B
Orthology - Evolution
OrthoDB25956
GeneTree (enSembl)ENSG00000075826
Phylogenetic Trees/Animal Genes : TreeFamSEC31B
Homologs : HomoloGeneSEC31B
Homology/Alignments : Family Browser (UCSC)SEC31B
Gene fusions - Rearrangements
Fusion : QuiverSEC31B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC31B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC31B
dbVarSEC31B
ClinVarSEC31B
MonarchSEC31B
1000_GenomesSEC31B 
Exome Variant ServerSEC31B
GNOMAD BrowserENSG00000075826
Varsome BrowserSEC31B
ACMGSEC31B variants
VarityQ9NQW1
Genomic Variants (DGV)SEC31B [DGVbeta]
DECIPHERSEC31B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC31B 
Mutations
ICGC Data PortalSEC31B 
TCGA Data PortalSEC31B 
Broad Tumor PortalSEC31B
OASIS PortalSEC31B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC31B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSEC31B
Mutations and Diseases : HGMDSEC31B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSEC31B
DgiDB (Drug Gene Interaction Database)SEC31B
DoCM (Curated mutations)SEC31B
CIViC (Clinical Interpretations of Variants in Cancer)SEC31B
Cancer3DSEC31B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610258   
Orphanet
DisGeNETSEC31B
MedgenSEC31B
Genetic Testing Registry SEC31B
NextProtQ9NQW1 [Medical]
GENETestsSEC31B
Target ValidationSEC31B
Huge Navigator SEC31B [HugePedia]
ClinGenSEC31B
Clinical trials, drugs, therapy
MyCancerGenomeSEC31B
Protein Interactions : CTDSEC31B
Pharm GKB GenePA162402792
PharosQ9NQW1
Clinical trialSEC31B
Miscellaneous
canSAR (ICR)SEC31B
HarmonizomeSEC31B
DataMed IndexSEC31B
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSEC31B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:09 CEST 2021

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