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SEC31B (SEC31 homolog B, COPII coat complex component)

Identity

Alias_namesSEC31L2
SEC31-like 2 (S. cerevisiae)
SEC31 homolog B (S. cerevisiae)
Alias_symbol (synonym)SEC31B-1
DKFZP434M183
Other alias
HGNC (Hugo) SEC31B
LocusID (NCBI) 25956
Atlas_Id 73096
Location 10q24.31  [Link to chromosome band 10q24]
Location_base_pair Starts at 100486646 and ends at 100519838 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
JMJD1C (10q21.3) / SEC31B (10q24.31)MYH14 (19q13.33) / SEC31B (10q24.31)SGIP1 (1p31.3) / SEC31B (10q24.31)
TUBD1 (17q23.1) / SEC31B (10q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEC31B   23197
Cards
Entrez_Gene (NCBI)SEC31B  25956  SEC31 homolog B, COPII coat complex component
AliasesSEC31B-1; SEC31L2
GeneCards (Weizmann)SEC31B
Ensembl hg19 (Hinxton)ENSG00000075826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075826 [Gene_View]  chr10:100486646-100519838 [Contig_View]  SEC31B [Vega]
ICGC DataPortalENSG00000075826
TCGA cBioPortalSEC31B
AceView (NCBI)SEC31B
Genatlas (Paris)SEC31B
WikiGenes25956
SOURCE (Princeton)SEC31B
Genetics Home Reference (NIH)SEC31B
Genomic and cartography
GoldenPath hg38 (UCSC)SEC31B  -     chr10:100486646-100519838 -  10q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEC31B  -     10q24.31   [Description]    (hg19-Feb_2009)
EnsemblSEC31B - 10q24.31 [CytoView hg19]  SEC31B - 10q24.31 [CytoView hg38]
Mapping of homologs : NCBISEC31B [Mapview hg19]  SEC31B [Mapview hg38]
OMIM610258   
Gene and transcription
Genbank (Entrez)AF274863 AF279139 AK093637 AK098002 AK128343
RefSeq transcript (Entrez)NM_015490 NM_198138
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEC31B
Cluster EST : UnigeneHs.18889 [ NCBI ]
CGAP (NCI)Hs.18889
Alternative Splicing GalleryENSG00000075826
Gene ExpressionSEC31B [ NCBI-GEO ]   SEC31B [ EBI - ARRAY_EXPRESS ]   SEC31B [ SEEK ]   SEC31B [ MEM ]
Gene Expression Viewer (FireBrowse)SEC31B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25956
GTEX Portal (Tissue expression)SEC31B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQW1
Splice isoforms : SwissVarQ9NQW1
PhosPhoSitePlusQ9NQW1
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)SEC31B
DMDM Disease mutations25956
Blocks (Seattle)SEC31B
SuperfamilyQ9NQW1
Human Protein AtlasENSG00000075826
Peptide AtlasQ9NQW1
HPRD15315
IPIIPI00023442   IPI00923389   IPI00426029   IPI00853086   IPI00954279   IPI01010694   IPI00978898   IPI01021130   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQW1
IntAct (EBI)Q9NQW1
FunCoupENSG00000075826
BioGRIDSEC31B
STRING (EMBL)SEC31B
ZODIACSEC31B
Ontologies - Pathways
QuickGOQ9NQW1
Ontology : AmiGOendoplasmic reticulum membrane  ER to Golgi transport vesicle membrane  protein transport  vesicle-mediated transport  vesicle coat  
Ontology : EGO-EBIendoplasmic reticulum membrane  ER to Golgi transport vesicle membrane  protein transport  vesicle-mediated transport  vesicle coat  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkSEC31B
Atlas of Cancer Signalling NetworkSEC31B
Wikipedia pathwaysSEC31B
Orthology - Evolution
OrthoDB25956
GeneTree (enSembl)ENSG00000075826
Phylogenetic Trees/Animal Genes : TreeFamSEC31B
HOVERGENQ9NQW1
HOGENOMQ9NQW1
Homologs : HomoloGeneSEC31B
Homology/Alignments : Family Browser (UCSC)SEC31B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC31B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC31B
dbVarSEC31B
ClinVarSEC31B
1000_GenomesSEC31B 
Exome Variant ServerSEC31B
ExAC (Exome Aggregation Consortium)SEC31B (select the gene name)
Genetic variants : HAPMAP25956
Genomic Variants (DGV)SEC31B [DGVbeta]
DECIPHERSEC31B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEC31B 
Mutations
ICGC Data PortalSEC31B 
TCGA Data PortalSEC31B 
Broad Tumor PortalSEC31B
OASIS PortalSEC31B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC31B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEC31B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC31B
DgiDB (Drug Gene Interaction Database)SEC31B
DoCM (Curated mutations)SEC31B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC31B (select a term)
intoGenSEC31B
Cancer3DSEC31B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610258   
Orphanet
MedgenSEC31B
Genetic Testing Registry SEC31B
NextProtQ9NQW1 [Medical]
TSGene25956
GENETestsSEC31B
Target ValidationSEC31B
Huge Navigator SEC31B [HugePedia]
snp3D : Map Gene to Disease25956
BioCentury BCIQSEC31B
ClinGenSEC31B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25956
Chemical/Pharm GKB GenePA162402792
Clinical trialSEC31B
Miscellaneous
canSAR (ICR)SEC31B (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC31B
EVEXSEC31B
GoPubMedSEC31B
iHOPSEC31B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:17 CEST 2017

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