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SEC61B (Sec61 translocon beta subunit)

Identity

Other names-
HGNC (Hugo) SEC61B
LocusID (NCBI) 10952
Atlas_Id 42240
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 101984570 and ends at 101992901 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEC61B   16993
Cards
Entrez_Gene (NCBI)SEC61B  10952  Sec61 translocon beta subunit
Aliases
GeneCards (Weizmann)SEC61B
Ensembl hg19 (Hinxton)ENSG00000106803 [Gene_View]  chr9:101984570-101992901 [Contig_View]  SEC61B [Vega]
Ensembl hg38 (Hinxton)ENSG00000106803 [Gene_View]  chr9:101984570-101992901 [Contig_View]  SEC61B [Vega]
ICGC DataPortalENSG00000106803
TCGA cBioPortalSEC61B
AceView (NCBI)SEC61B
Genatlas (Paris)SEC61B
WikiGenes10952
SOURCE (Princeton)SEC61B
Genomic and cartography
GoldenPath hg19 (UCSC)SEC61B  -     chr9:101984570-101992901 +  9q22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SEC61B  -     9q22.33   [Description]    (hg38-Dec_2013)
EnsemblSEC61B - 9q22.33 [CytoView hg19]  SEC61B - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBISEC61B [Mapview hg19]  SEC61B [Mapview hg38]
OMIM609214   
Gene and transcription
Genbank (Entrez)AJ293399 AK223384 BC001734 CR456883 CR542159
RefSeq transcript (Entrez)NM_006808
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)SEC61B
Cluster EST : UnigeneHs.191887 [ NCBI ]
CGAP (NCI)Hs.191887
Alternative Splicing GalleryENSG00000106803
Gene ExpressionSEC61B [ NCBI-GEO ]   SEC61B [ EBI - ARRAY_EXPRESS ]   SEC61B [ SEEK ]   SEC61B [ MEM ]
Gene Expression Viewer (FireBrowse)SEC61B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10952
GTEX Portal (Tissue expression)SEC61B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60468 (Uniprot)
NextProtP60468  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60468
Splice isoforms : SwissVarP60468 (Swissvar)
PhosPhoSitePlusP60468
Domains : Interpro (EBI)Sec61-beta/Sbh    SecG/Sec61-beta/Sbh   
Domain families : Pfam (Sanger)Sec61_beta (PF03911)   
Domain families : Pfam (NCBI)pfam03911   
DMDM Disease mutations10952
Blocks (Seattle)SEC61B
SuperfamilyP60468
Human Protein AtlasENSG00000106803
Peptide AtlasP60468
HPRD06715
IPIIPI00220835   
Protein Interaction databases
DIP (DOE-UCLA)P60468
IntAct (EBI)P60468
FunCoupENSG00000106803
BioGRIDSEC61B
STRING (EMBL)SEC61B
ZODIACSEC61B
Ontologies - Pathways
QuickGOP60468
Ontology : AmiGOprotein import into nucleus, translocation  protein binding  endoplasmic reticulum  Sec61 translocon complex  endoplasmic reticulum membrane  cytosol  membrane  integral component of membrane  ER-associated ubiquitin-dependent protein catabolic process  retrograde protein transport, ER to cytosol  endoplasmic reticulum Sec complex  IRE1-mediated unfolded protein response  poly(A) RNA binding  epidermal growth factor binding  
Ontology : EGO-EBIprotein import into nucleus, translocation  protein binding  endoplasmic reticulum  Sec61 translocon complex  endoplasmic reticulum membrane  cytosol  membrane  integral component of membrane  ER-associated ubiquitin-dependent protein catabolic process  retrograde protein transport, ER to cytosol  endoplasmic reticulum Sec complex  IRE1-mediated unfolded protein response  poly(A) RNA binding  epidermal growth factor binding  
Pathways : KEGGProtein export    Protein processing in endoplasmic reticulum    Phagosome    Vibrio cholerae infection   
NDEx Network
Atlas of Cancer Signalling NetworkSEC61B
Wikipedia pathwaysSEC61B
Orthology - Evolution
OrthoDB10952
GeneTree (enSembl)ENSG00000106803
Phylogenetic Trees/Animal Genes : TreeFamSEC61B
Homologs : HomoloGeneSEC61B
Homology/Alignments : Family Browser (UCSC)SEC61B
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSEC61B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC61B
dbVarSEC61B
ClinVarSEC61B
1000_GenomesSEC61B 
Exome Variant ServerSEC61B
ExAC (Exome Aggregation Consortium)SEC61B (select the gene name)
Genetic variants : HAPMAP10952
Genomic Variants (DGV)SEC61B [DGVbeta]
Mutations
ICGC Data PortalSEC61B 
TCGA Data PortalSEC61B 
Broad Tumor PortalSEC61B
OASIS PortalSEC61B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC61B 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC61B
DgiDB (Drug Gene Interaction Database)SEC61B
DoCM (Curated mutations)SEC61B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC61B (select a term)
intoGenSEC61B
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)9:101984570-101992901  ENSG00000106803
CONAN: Copy Number AnalysisSEC61B 
Mutations and Diseases : HGMDSEC61B
OMIM609214   
MedgenSEC61B
Genetic Testing Registry SEC61B
NextProtP60468 [Medical]
TSGene10952
GENETestsSEC61B
Huge Navigator SEC61B [HugePedia]
snp3D : Map Gene to Disease10952
BioCentury BCIQSEC61B
ClinGenSEC61B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10952
Chemical/Pharm GKB GenePA134888963
Clinical trialSEC61B
Miscellaneous
canSAR (ICR)SEC61B (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC61B
EVEXSEC61B
GoPubMedSEC61B
iHOPSEC61B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 9 19:16:54 CEST 2016

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