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SEC61G (Sec61 translocon gamma subunit)

Identity

Alias_namesSec61 gamma subunit
Alias_symbol (synonym)SSS1
Other alias
HGNC (Hugo) SEC61G
LocusID (NCBI) 23480
Atlas_Id 42241
Location 7p11.2  [Link to chromosome band 7p11]
Location_base_pair Starts at 54819940 and ends at 54826939 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CREM (10p11.21) / SEC61G (7p11.2)SEC61G (7p11.2) / EGFR (7p11.2)SEC61G (7p11.2) / ZNF446 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEC61G   18277
Cards
Entrez_Gene (NCBI)SEC61G  23480  Sec61 translocon gamma subunit
AliasesSSS1
GeneCards (Weizmann)SEC61G
Ensembl hg19 (Hinxton)ENSG00000132432 [Gene_View]  chr7:54819940-54826939 [Contig_View]  SEC61G [Vega]
Ensembl hg38 (Hinxton)ENSG00000132432 [Gene_View]  chr7:54819940-54826939 [Contig_View]  SEC61G [Vega]
ICGC DataPortalENSG00000132432
TCGA cBioPortalSEC61G
AceView (NCBI)SEC61G
Genatlas (Paris)SEC61G
WikiGenes23480
SOURCE (Princeton)SEC61G
Genetics Home Reference (NIH)SEC61G
Genomic and cartography
GoldenPath hg19 (UCSC)SEC61G  -     chr7:54819940-54826939 -  7p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SEC61G  -     7p11.2   [Description]    (hg38-Dec_2013)
EnsemblSEC61G - 7p11.2 [CytoView hg19]  SEC61G - 7p11.2 [CytoView hg38]
Mapping of homologs : NCBISEC61G [Mapview hg19]  SEC61G [Mapview hg38]
OMIM609215   
Gene and transcription
Genbank (Entrez)AF054184 AF086539 AK308617 AK311845 AM393406
RefSeq transcript (Entrez)NM_001012456 NM_014302
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929330
Consensus coding sequences : CCDS (NCBI)SEC61G
Cluster EST : UnigeneHs.488282 [ NCBI ]
CGAP (NCI)Hs.488282
Alternative Splicing GalleryENSG00000132432
Gene ExpressionSEC61G [ NCBI-GEO ]   SEC61G [ EBI - ARRAY_EXPRESS ]   SEC61G [ SEEK ]   SEC61G [ MEM ]
Gene Expression Viewer (FireBrowse)SEC61G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23480
GTEX Portal (Tissue expression)SEC61G
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60059   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60059  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60059
Splice isoforms : SwissVarP60059
PhosPhoSitePlusP60059
Domaine pattern : Prosite (Expaxy)SECE_SEC61G (PS01067)   
Domains : Interpro (EBI)Prot_translocase_SecE_dom    SecE    Translocase_Sec61-g    Translocase_SecE/Sec61-g   
Domain families : Pfam (Sanger)SecE (PF00584)   
Domain families : Pfam (NCBI)pfam00584   
Conserved Domain (NCBI)SEC61G
DMDM Disease mutations23480
Blocks (Seattle)SEC61G
SuperfamilyP60059
Human Protein AtlasENSG00000132432
Peptide AtlasP60059
HPRD15318
IPIIPI00006072   
Protein Interaction databases
DIP (DOE-UCLA)P60059
IntAct (EBI)P60059
FunCoupENSG00000132432
BioGRIDSEC61G
STRING (EMBL)SEC61G
ZODIACSEC61G
Ontologies - Pathways
QuickGOP60059
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  cytosol  protein transporter activity  P-P-bond-hydrolysis-driven protein transmembrane transporter activity  membrane  integral component of membrane  IRE1-mediated unfolded protein response  protein targeting to ER  protein transmembrane transport  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  cytosol  protein transporter activity  P-P-bond-hydrolysis-driven protein transmembrane transporter activity  membrane  integral component of membrane  IRE1-mediated unfolded protein response  protein targeting to ER  protein transmembrane transport  
Pathways : KEGGProtein export    Protein processing in endoplasmic reticulum    Phagosome    Vibrio cholerae infection   
NDEx NetworkSEC61G
Atlas of Cancer Signalling NetworkSEC61G
Wikipedia pathwaysSEC61G
Orthology - Evolution
OrthoDB23480
GeneTree (enSembl)ENSG00000132432
Phylogenetic Trees/Animal Genes : TreeFamSEC61G
HOVERGENP60059
HOGENOMP60059
Homologs : HomoloGeneSEC61G
Homology/Alignments : Family Browser (UCSC)SEC61G
Gene fusions - Rearrangements
Fusion : MitelmanSEC61G/EGFR [7p11.2/7p11.2]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEC61G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEC61G
dbVarSEC61G
ClinVarSEC61G
1000_GenomesSEC61G 
Exome Variant ServerSEC61G
ExAC (Exome Aggregation Consortium)SEC61G (select the gene name)
Genetic variants : HAPMAP23480
Genomic Variants (DGV)SEC61G [DGVbeta]
DECIPHER (Syndromes)7:54819940-54826939  ENSG00000132432
CONAN: Copy Number AnalysisSEC61G 
Mutations
ICGC Data PortalSEC61G 
TCGA Data PortalSEC61G 
Broad Tumor PortalSEC61G
OASIS PortalSEC61G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEC61G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEC61G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEC61G
DgiDB (Drug Gene Interaction Database)SEC61G
DoCM (Curated mutations)SEC61G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEC61G (select a term)
intoGenSEC61G
Cancer3DSEC61G(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609215   
Orphanet
MedgenSEC61G
Genetic Testing Registry SEC61G
NextProtP60059 [Medical]
TSGene23480
GENETestsSEC61G
Huge Navigator SEC61G [HugePedia]
snp3D : Map Gene to Disease23480
BioCentury BCIQSEC61G
ClinGenSEC61G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23480
Chemical/Pharm GKB GenePA134939045
Clinical trialSEC61G
Miscellaneous
canSAR (ICR)SEC61G (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEC61G
EVEXSEC61G
GoPubMedSEC61G
iHOPSEC61G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:18:40 CEST 2017

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