Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SEC63 (SEC63 homolog (S. cerevisiae))

Identity

Other namesDNAJC23
ERdj2
PRO2507
SEC63L
HGNC (Hugo) SEC63
LocusID (NCBI) 11231
Location 6q21
Location_base_pair Starts at 108188960 and ends at 108279482 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SEC63   21082
Entrez_Gene (NCBI)SEC63  11231  SEC63 homolog (S. cerevisiae)
Cards
GeneCards (Weizmann)SEC63
Ensembl (Hinxton)ENSG00000025796 [Gene_View]  chr6:108188960-108279482 [Contig_View]  SEC63 [Vega]
AceView (NCBI)SEC63
Genatlas (Paris)SEC63
SOURCE (Stanford)NM_007214 NM_018529
Genomic and cartography
GoldenPath (UCSC)SEC63  -  6q21   chr6:108188960-108279482 -  6q21   [Description]    (hg19-Feb_2009)
EnsemblSEC63 - 6q21 [CytoView]
Mapping of homologs : NCBISEC63 [Mapview]
OMIM174050   608648   
Gene and transcription
Genbank (Entrez)AF100141 AF119883 AI559292 AJ011779 AJ420532
RefSeq transcript (SRS)NM_007214 NM_018529
RefSeq transcript (Entrez)NM_007214 NM_018529
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NG_008270 NT_025741 NW_001838990 NW_004078028
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NG_008270 NT_025741 NW_001838990 NW_004078028
Consensus coding sequences : CCDS (NCBI)SEC63
Cluster EST : UnigeneHs.26904 [ SRS ] Hs.26904 [ NCBI ]
CGAP (NCI)Hs.26904
Alternative Splicing : Fast-db (Paris)GSHG0026822
Alternative Splicing GalleryENSG00000025796
Gene ExpressionSEC63 [ NCBI-GEO ]   SEC63 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGP8 (SRS) Q9UGP8 (Uniprot)
NextProtQ9UGP8
With graphics : InterProQ9UGP8
Splice isoforms : SwissVarQ9UGP8(Swissvar)
Domaine pattern : Prosite (SRS)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)   
Domains : Interpro (SRS)DnaJ_N    Hsp_DnaJ    Sec63-dom   
Domains : Interpro (EBI)DnaJ_N    Hsp_DnaJ    Sec63-dom   
Related proteins : CluSTrQ9UGP8
Domain families : Pfam (SRS)DnaJ (PF00226)    Sec63 (PF02889)   
Domain families : Pfam (Sanger)DnaJ (PF00226)    Sec63 (PF02889)   
Domain families : Pfam (NCBI)pfam00226    pfam02889   
Domain families : Smart (EMBL)DnaJ (SM00271)  SEC63 (SM00611)  Sec63 (SM00973)  
DMDM11231
Blocks (Seattle)Q9UGP8
Human Protein AtlasENSG00000025796
HPRD09783
IPIIPI00218922   IPI00902496   IPI00903261   IPI00383314   IPI00852625   IPI00893574   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGP8
IntAct (EBI)Q9UGP8
FunCoupENSG00000025796
REACTOMESEC63
Protein Interaction Database11231
BioGRIDSEC63
InParanoidQ9UGP8
Interologous Interaction database Q9UGP8
IntegromeDBSEC63
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SEC63
SNP (GeneSNP Utah)SEC63
SNP : HGBaseSEC63
Genetic variants : HAPMAPSEC63
Somatic Mutations in Cancer : COSMICSEC63 
CONAN: Copy Number AnalysisSEC63 
Mutations and Diseases : HGMDSEC63
OMIM174050    608648   
GENETests174050    608648   
Disease Genetic AssociationSEC63
Huge Navigator SEC63 [HugePedia]  SEC63 [HugeCancerGEM]
Genomic VariantsSEC63  SEC63 [DGVbeta]
snp3D : Map Gene to Disease11231
General knowledge
Homologs : HomoloGeneSEC63
Homology/Alignments : Family Browser (UCSC)SEC63
Phylogenetic Trees/Animal Genes : TreeFamSEC63
Chemical/Protein Interactions : CTD11231
Chemical/Pharm GKB GenePA134936990
Clinical trialSEC63
Cancer Resource (Charite)ENSG00000025796
Ontology : AmiGOreceptor activity  endoplasmic reticulum  endoplasmic reticulum membrane  protein folding  protein targeting to membrane  integral to membrane  heat shock protein binding  unfolded protein binding  
Ontology : EGO-EBIreceptor activity  endoplasmic reticulum  endoplasmic reticulum membrane  protein folding  protein targeting to membrane  integral to membrane  heat shock protein binding  unfolded protein binding  
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
PubGeneSEC63
iHOPSEC63
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:35:51 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.