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SEC63 (SEC63 homolog (S. cerevisiae))

Identity

Other namesDNAJC23
ERdj2
PRO2507
SEC63L
HGNC (Hugo) SEC63
LocusID (NCBI) 11231
Location 6q21
Location_base_pair Starts at 108188960 and ends at 108279482 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SEC63   21082
Cards
Entrez_Gene (NCBI)SEC63  11231  SEC63 homolog (S. cerevisiae)
GeneCards (Weizmann)SEC63
Ensembl (Hinxton)ENSG00000025796 [Gene_View]  chr6:108188960-108279482 [Contig_View]  SEC63 [Vega]
ICGC DataPortalENSG00000025796
AceView (NCBI)SEC63
Genatlas (Paris)SEC63
WikiGenes11231
SOURCE (Princeton)NM_007214 NM_018529
Genomic and cartography
GoldenPath (UCSC)SEC63  -  6q21   chr6:108188960-108279482 -  6q21   [Description]    (hg19-Feb_2009)
EnsemblSEC63 - 6q21 [CytoView]
Mapping of homologs : NCBISEC63 [Mapview]
OMIM174050   608648   
Gene and transcription
Genbank (Entrez)AF100141 AF119883 AI559292 AJ011779 AJ420532
RefSeq transcript (Entrez)NM_007214 NM_018529
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NG_008270 NT_025741 NW_001838990 NW_004929328
Consensus coding sequences : CCDS (NCBI)SEC63
Cluster EST : UnigeneHs.26904 [ NCBI ]
CGAP (NCI)Hs.26904
Alternative Splicing : Fast-db (Paris)GSHG0026822
Alternative Splicing GalleryENSG00000025796
Gene ExpressionSEC63 [ NCBI-GEO ]     SEC63 [ SEEK ]   SEC63 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGP8 (Uniprot)
NextProtQ9UGP8  [Medical]
With graphics : InterProQ9UGP8
Splice isoforms : SwissVarQ9UGP8 (Swissvar)
Domaine pattern : Prosite (Expaxy)DNAJ_2 (PS50076)   
Domains : Interpro (EBI)C2_dom    DnaJ_domain    Ig_E-set    Sec63    Sec63-dom   
Related proteins : CluSTrQ9UGP8
Domain families : Pfam (Sanger)DnaJ (PF00226)    Sec63 (PF02889)   
Domain families : Pfam (NCBI)pfam00226    pfam02889   
Domain families : Smart (EMBL)DnaJ (SM00271)  SEC63 (SM00611)  Sec63 (SM00973)  
DMDM Disease mutations11231
Blocks (Seattle)Q9UGP8
Human Protein AtlasENSG00000025796
Peptide AtlasQ9UGP8
HPRD09783
IPIIPI00218922   IPI00902496   IPI00903261   IPI00383314   IPI00852625   IPI00893574   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGP8
IntAct (EBI)Q9UGP8
FunCoupENSG00000025796
BioGRIDSEC63
InParanoidQ9UGP8
Interologous Interaction database Q9UGP8
IntegromeDBSEC63
STRING (EMBL)SEC63
Ontologies - Pathways
Ontology : AmiGOliver development  receptor activity  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  protein targeting to membrane  SRP-dependent cotranslational protein targeting to membrane  posttranslational protein targeting to membrane  nitrogen compound metabolic process  protein transporter activity  multicellular organismal aging  membrane  integral component of membrane  posttranslational protein targeting to membrane, translocation  poly(A) RNA binding  renal system development  
Ontology : EGO-EBIliver development  receptor activity  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  protein targeting to membrane  SRP-dependent cotranslational protein targeting to membrane  posttranslational protein targeting to membrane  nitrogen compound metabolic process  protein transporter activity  multicellular organismal aging  membrane  integral component of membrane  posttranslational protein targeting to membrane, translocation  poly(A) RNA binding  renal system development  
Pathways : KEGGProtein export    Protein processing in endoplasmic reticulum   
Protein Interaction DatabaseSEC63
Wikipedia pathwaysSEC63
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SEC63
SNP (GeneSNP Utah)SEC63
SNP : HGBaseSEC63
Genetic variants : HAPMAPSEC63
1000_GenomesSEC63 
ICGC programENSG00000025796 
CONAN: Copy Number AnalysisSEC63 
Somatic Mutations in Cancer : COSMICSEC63 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDSEC63
OMIM174050    608648   
MedgenSEC63
GENETestsSEC63
Disease Genetic AssociationSEC63
Huge Navigator SEC63 [HugePedia]  SEC63 [HugeCancerGEM]
Genomic VariantsSEC63  SEC63 [DGVbeta]
Exome VariantSEC63
dbVarSEC63
ClinVarSEC63
snp3D : Map Gene to Disease11231
General knowledge
Homologs : HomoloGeneSEC63
Homology/Alignments : Family Browser (UCSC)SEC63
Phylogenetic Trees/Animal Genes : TreeFamSEC63
Chemical/Protein Interactions : CTD11231
Chemical/Pharm GKB GenePA134936990
Clinical trialSEC63
Cancer Resource (Charite)ENSG00000025796
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
CoreMineSEC63
iHOPSEC63
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:15:25 CEST 2014

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