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SECISBP2 (SECIS binding protein 2)

Identity

Other aliasSBP2
HGNC (Hugo) SECISBP2
LocusID (NCBI) 79048
Atlas_Id 73098
Location 9q22.2  [Link to chromosome band 9q22]
Location_base_pair Starts at 89318473 and ends at 89359663 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIST1H2BC (6p22.2) / SECISBP2 (9q22.2)MRC2 (17q23.2) / SECISBP2 (9q22.2)SECISBP2 (9q22.2) / ENY2 (8q23.1)
SECISBP2 (9q22.2) / MYH9 (22q12.3)SECISBP2 (9q22.2) / NEDD4L (18q21.31)SECISBP2 (9q22.2) / RBM3 (Xp11.23)
SECISBP2 (9q22.2) / SECISBP2 (9q22.2)WNK2 (9q22.31) / SECISBP2 (9q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SECISBP2   30972
Cards
Entrez_Gene (NCBI)SECISBP2  79048  SECIS binding protein 2
AliasesSBP2
GeneCards (Weizmann)SECISBP2
Ensembl hg19 (Hinxton)ENSG00000187742 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187742 [Gene_View]  chr9:89318473-89359663 [Contig_View]  SECISBP2 [Vega]
ICGC DataPortalENSG00000187742
TCGA cBioPortalSECISBP2
AceView (NCBI)SECISBP2
Genatlas (Paris)SECISBP2
WikiGenes79048
SOURCE (Princeton)SECISBP2
Genetics Home Reference (NIH)SECISBP2
Genomic and cartography
GoldenPath hg38 (UCSC)SECISBP2  -     chr9:89318473-89359663 +  9q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SECISBP2  -     9q22.2   [Description]    (hg19-Feb_2009)
EnsemblSECISBP2 - 9q22.2 [CytoView hg19]  SECISBP2 - 9q22.2 [CytoView hg38]
Mapping of homologs : NCBISECISBP2 [Mapview hg19]  SECISBP2 [Mapview hg38]
OMIM607693   609698   
Gene and transcription
Genbank (Entrez)AB208940 AF380995 AK023078 AK090608 AK127655
RefSeq transcript (Entrez)NM_001282688 NM_001282689 NM_001282690 NM_024077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SECISBP2
Cluster EST : UnigeneHs.667515 [ NCBI ]
CGAP (NCI)Hs.667515
Alternative Splicing GalleryENSG00000187742
Gene ExpressionSECISBP2 [ NCBI-GEO ]   SECISBP2 [ EBI - ARRAY_EXPRESS ]   SECISBP2 [ SEEK ]   SECISBP2 [ MEM ]
Gene Expression Viewer (FireBrowse)SECISBP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79048
GTEX Portal (Tissue expression)SECISBP2
Human Protein AtlasENSG00000187742-SECISBP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96T21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96T21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96T21
Splice isoforms : SwissVarQ96T21
PhosPhoSitePlusQ96T21
Domains : Interpro (EBI)L30e-like    Ribosomal_L7Ae/L30e/S12e/Gad45   
Domain families : Pfam (Sanger)Ribosomal_L7Ae (PF01248)   
Domain families : Pfam (NCBI)pfam01248   
Conserved Domain (NCBI)SECISBP2
DMDM Disease mutations79048
Blocks (Seattle)SECISBP2
SuperfamilyQ96T21
Human Protein Atlas [tissue]ENSG00000187742-SECISBP2 [tissue]
Peptide AtlasQ96T21
HPRD07408
IPIIPI00556241   IPI00639831   IPI00386828   IPI01013110   IPI00871494   IPI00640490   
Protein Interaction databases
DIP (DOE-UCLA)Q96T21
IntAct (EBI)Q96T21
FunCoupENSG00000187742
BioGRIDSECISBP2
STRING (EMBL)SECISBP2
ZODIACSECISBP2
Ontologies - Pathways
QuickGOQ96T21
Ontology : AmiGOselenocysteine incorporation  RNA binding  mRNA 3'-UTR binding  protein binding  nucleus  mitochondrion  striatum development  intracellular ribonucleoprotein complex  selenocysteine insertion sequence binding  ribonucleoprotein complex binding  neuron development  negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  
Ontology : EGO-EBIselenocysteine incorporation  RNA binding  mRNA 3'-UTR binding  protein binding  nucleus  mitochondrion  striatum development  intracellular ribonucleoprotein complex  selenocysteine insertion sequence binding  ribonucleoprotein complex binding  neuron development  negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  
NDEx NetworkSECISBP2
Atlas of Cancer Signalling NetworkSECISBP2
Wikipedia pathwaysSECISBP2
Orthology - Evolution
OrthoDB79048
GeneTree (enSembl)ENSG00000187742
Phylogenetic Trees/Animal Genes : TreeFamSECISBP2
HOVERGENQ96T21
HOGENOMQ96T21
Homologs : HomoloGeneSECISBP2
Homology/Alignments : Family Browser (UCSC)SECISBP2
Gene fusions - Rearrangements
Tumor Fusion PortalSECISBP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSECISBP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SECISBP2
dbVarSECISBP2
ClinVarSECISBP2
1000_GenomesSECISBP2 
Exome Variant ServerSECISBP2
ExAC (Exome Aggregation Consortium)ENSG00000187742
GNOMAD BrowserENSG00000187742
Genetic variants : HAPMAP79048
Genomic Variants (DGV)SECISBP2 [DGVbeta]
DECIPHERSECISBP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSECISBP2 
Mutations
ICGC Data PortalSECISBP2 
TCGA Data PortalSECISBP2 
Broad Tumor PortalSECISBP2
OASIS PortalSECISBP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSECISBP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSECISBP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SECISBP2
DgiDB (Drug Gene Interaction Database)SECISBP2
DoCM (Curated mutations)SECISBP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SECISBP2 (select a term)
intoGenSECISBP2
Cancer3DSECISBP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607693    609698   
Orphanet17931   
DisGeNETSECISBP2
MedgenSECISBP2
Genetic Testing Registry SECISBP2
NextProtQ96T21 [Medical]
TSGene79048
GENETestsSECISBP2
Target ValidationSECISBP2
Huge Navigator SECISBP2 [HugePedia]
snp3D : Map Gene to Disease79048
BioCentury BCIQSECISBP2
ClinGenSECISBP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79048
Chemical/Pharm GKB GenePA134863749
Clinical trialSECISBP2
Miscellaneous
canSAR (ICR)SECISBP2 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSECISBP2
EVEXSECISBP2
GoPubMedSECISBP2
iHOPSECISBP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:11:36 CET 2017

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