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SECISBP2L (SECIS binding protein 2 like)

Identity

Alias_symbol (synonym)KIAA0256
Other aliasSBP2L
SLAN
HGNC (Hugo) SECISBP2L
LocusID (NCBI) 9728
Atlas_Id 52534
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 48988639 and ends at 49046563 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C2orf61 (2p21) / SECISBP2L (15q21.1)USO1 (4q21.1) / SECISBP2L (15q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SECISBP2L   28997
Cards
Entrez_Gene (NCBI)SECISBP2L  9728  SECIS binding protein 2 like
AliasesSBP2L; SLAN
GeneCards (Weizmann)SECISBP2L
Ensembl hg19 (Hinxton)ENSG00000138593 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138593 [Gene_View]  chr15:48988639-49046563 [Contig_View]  SECISBP2L [Vega]
ICGC DataPortalENSG00000138593
TCGA cBioPortalSECISBP2L
AceView (NCBI)SECISBP2L
Genatlas (Paris)SECISBP2L
WikiGenes9728
SOURCE (Princeton)SECISBP2L
Genetics Home Reference (NIH)SECISBP2L
Genomic and cartography
GoldenPath hg38 (UCSC)SECISBP2L  -     chr15:48988639-49046563 -  15q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SECISBP2L  -     15q21.1   [Description]    (hg19-Feb_2009)
EnsemblSECISBP2L - 15q21.1 [CytoView hg19]  SECISBP2L - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBISECISBP2L [Mapview hg19]  SECISBP2L [Mapview hg38]
OMIM615756   
Gene and transcription
Genbank (Entrez)AK307480 AK308183 BC008635 BC033001 BM129242
RefSeq transcript (Entrez)NM_001193489 NM_014701
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SECISBP2L
Cluster EST : UnigeneHs.9997 [ NCBI ]
CGAP (NCI)Hs.9997
Alternative Splicing GalleryENSG00000138593
Gene ExpressionSECISBP2L [ NCBI-GEO ]   SECISBP2L [ EBI - ARRAY_EXPRESS ]   SECISBP2L [ SEEK ]   SECISBP2L [ MEM ]
Gene Expression Viewer (FireBrowse)SECISBP2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9728
GTEX Portal (Tissue expression)SECISBP2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ93073   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ93073  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ93073
Splice isoforms : SwissVarQ93073
PhosPhoSitePlusQ93073
Domains : Interpro (EBI)L30e-like    Ribosomal_L7Ae/L30e/S12e/Gad45   
Domain families : Pfam (Sanger)Ribosomal_L7Ae (PF01248)   
Domain families : Pfam (NCBI)pfam01248   
Conserved Domain (NCBI)SECISBP2L
DMDM Disease mutations9728
Blocks (Seattle)SECISBP2L
SuperfamilyQ93073
Human Protein AtlasENSG00000138593
Peptide AtlasQ93073
HPRD17181
IPIIPI00004067   IPI00655652   
Protein Interaction databases
DIP (DOE-UCLA)Q93073
IntAct (EBI)Q93073
FunCoupENSG00000138593
BioGRIDSECISBP2L
STRING (EMBL)SECISBP2L
ZODIACSECISBP2L
Ontologies - Pathways
QuickGOQ93073
Ontology : AmiGOselenocysteine incorporation  RNA binding  mRNA 3'-UTR binding  protein binding  intracellular ribonucleoprotein complex  selenocysteine insertion sequence binding  ribonucleoprotein complex binding  
Ontology : EGO-EBIselenocysteine incorporation  RNA binding  mRNA 3'-UTR binding  protein binding  intracellular ribonucleoprotein complex  selenocysteine insertion sequence binding  ribonucleoprotein complex binding  
NDEx NetworkSECISBP2L
Atlas of Cancer Signalling NetworkSECISBP2L
Wikipedia pathwaysSECISBP2L
Orthology - Evolution
OrthoDB9728
GeneTree (enSembl)ENSG00000138593
Phylogenetic Trees/Animal Genes : TreeFamSECISBP2L
HOVERGENQ93073
HOGENOMQ93073
Homologs : HomoloGeneSECISBP2L
Homology/Alignments : Family Browser (UCSC)SECISBP2L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSECISBP2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SECISBP2L
dbVarSECISBP2L
ClinVarSECISBP2L
1000_GenomesSECISBP2L 
Exome Variant ServerSECISBP2L
ExAC (Exome Aggregation Consortium)SECISBP2L (select the gene name)
Genetic variants : HAPMAP9728
Genomic Variants (DGV)SECISBP2L [DGVbeta]
DECIPHERSECISBP2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSECISBP2L 
Mutations
ICGC Data PortalSECISBP2L 
TCGA Data PortalSECISBP2L 
Broad Tumor PortalSECISBP2L
OASIS PortalSECISBP2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSECISBP2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSECISBP2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SECISBP2L
DgiDB (Drug Gene Interaction Database)SECISBP2L
DoCM (Curated mutations)SECISBP2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SECISBP2L (select a term)
intoGenSECISBP2L
Cancer3DSECISBP2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615756   
Orphanet
MedgenSECISBP2L
Genetic Testing Registry SECISBP2L
NextProtQ93073 [Medical]
TSGene9728
GENETestsSECISBP2L
Target ValidationSECISBP2L
Huge Navigator SECISBP2L [HugePedia]
snp3D : Map Gene to Disease9728
BioCentury BCIQSECISBP2L
ClinGenSECISBP2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9728
Chemical/Pharm GKB GenePA164725649
Clinical trialSECISBP2L
Miscellaneous
canSAR (ICR)SECISBP2L (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSECISBP2L
EVEXSECISBP2L
GoPubMedSECISBP2L
iHOPSECISBP2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:54:47 CEST 2017

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