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SECTM1 (secreted and transmembrane 1)

Identity

Alias_symbol (synonym)K12
Other alias
HGNC (Hugo) SECTM1
LocusID (NCBI) 6398
Atlas_Id 52581
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 80278900 and ends at 80291921 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CSNK1D (17q25.3) / SECTM1 (17q25.3)RASGRP3 (2p22.3) / SECTM1 (17q25.3)CSNK1D 17q25.3 / SECTM1 17q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SECTM1   10707
Cards
Entrez_Gene (NCBI)SECTM1  6398  secreted and transmembrane 1
AliasesK12
GeneCards (Weizmann)SECTM1
Ensembl hg19 (Hinxton)ENSG00000141574 [Gene_View]  chr17:80278900-80291921 [Contig_View]  SECTM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000141574 [Gene_View]  chr17:80278900-80291921 [Contig_View]  SECTM1 [Vega]
ICGC DataPortalENSG00000141574
TCGA cBioPortalSECTM1
AceView (NCBI)SECTM1
Genatlas (Paris)SECTM1
WikiGenes6398
SOURCE (Princeton)SECTM1
Genetics Home Reference (NIH)SECTM1
Genomic and cartography
GoldenPath hg19 (UCSC)SECTM1  -     chr17:80278900-80291921 -  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SECTM1  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblSECTM1 - 17q25.3 [CytoView hg19]  SECTM1 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBISECTM1 [Mapview hg19]  SECTM1 [Mapview hg38]
OMIM602602   
Gene and transcription
Genbank (Entrez)AK223068 AK223104 AK290708 AK312980 BC017716
RefSeq transcript (Entrez)NM_003004
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010663 NW_004929408
Consensus coding sequences : CCDS (NCBI)SECTM1
Cluster EST : UnigeneHs.558009 [ NCBI ]
CGAP (NCI)Hs.558009
Alternative Splicing GalleryENSG00000141574
Gene ExpressionSECTM1 [ NCBI-GEO ]   SECTM1 [ EBI - ARRAY_EXPRESS ]   SECTM1 [ SEEK ]   SECTM1 [ MEM ]
Gene Expression Viewer (FireBrowse)SECTM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6398
GTEX Portal (Tissue expression)SECTM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVN6
Splice isoforms : SwissVarQ8WVN6
PhosPhoSitePlusQ8WVN6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SECTM1
DMDM Disease mutations6398
Blocks (Seattle)SECTM1
SuperfamilyQ8WVN6
Human Protein AtlasENSG00000141574
Peptide AtlasQ8WVN6
HPRD04004
IPIIPI00170635   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVN6
IntAct (EBI)Q8WVN6
FunCoupENSG00000141574
BioGRIDSECTM1
STRING (EMBL)SECTM1
ZODIACSECTM1
Ontologies - Pathways
QuickGOQ8WVN6
Ontology : AmiGOsignal transducer activity  cytokine activity  extracellular space  Golgi apparatus  plasma membrane  immune response  signal transduction  mesoderm development  integral component of membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  extracellular exosome  
Ontology : EGO-EBIsignal transducer activity  cytokine activity  extracellular space  Golgi apparatus  plasma membrane  immune response  signal transduction  mesoderm development  integral component of membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  extracellular exosome  
NDEx NetworkSECTM1
Atlas of Cancer Signalling NetworkSECTM1
Wikipedia pathwaysSECTM1
Orthology - Evolution
OrthoDB6398
GeneTree (enSembl)ENSG00000141574
Phylogenetic Trees/Animal Genes : TreeFamSECTM1
HOVERGENQ8WVN6
HOGENOMQ8WVN6
Homologs : HomoloGeneSECTM1
Homology/Alignments : Family Browser (UCSC)SECTM1
Gene fusions - Rearrangements
Fusion : MitelmanCSNK1D/SECTM1 [17q25.3/17q25.3]  [t(17;17)(q25;q25)]  
Fusion: TCGACSNK1D 17q25.3 SECTM1 17q25.3 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSECTM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SECTM1
dbVarSECTM1
ClinVarSECTM1
1000_GenomesSECTM1 
Exome Variant ServerSECTM1
ExAC (Exome Aggregation Consortium)SECTM1 (select the gene name)
Genetic variants : HAPMAP6398
Genomic Variants (DGV)SECTM1 [DGVbeta]
DECIPHER (Syndromes)17:80278900-80291921  ENSG00000141574
CONAN: Copy Number AnalysisSECTM1 
Mutations
ICGC Data PortalSECTM1 
TCGA Data PortalSECTM1 
Broad Tumor PortalSECTM1
OASIS PortalSECTM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSECTM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSECTM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SECTM1
DgiDB (Drug Gene Interaction Database)SECTM1
DoCM (Curated mutations)SECTM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SECTM1 (select a term)
intoGenSECTM1
Cancer3DSECTM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602602   
Orphanet
MedgenSECTM1
Genetic Testing Registry SECTM1
NextProtQ8WVN6 [Medical]
TSGene6398
GENETestsSECTM1
Huge Navigator SECTM1 [HugePedia]
snp3D : Map Gene to Disease6398
BioCentury BCIQSECTM1
ClinGenSECTM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6398
Chemical/Pharm GKB GenePA35630
Clinical trialSECTM1
Miscellaneous
canSAR (ICR)SECTM1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSECTM1
EVEXSECTM1
GoPubMedSECTM1
iHOPSECTM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:26:35 CET 2017

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