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SEL1L3 (SEL1L family member 3)

Identity

Alias_namessel-1 suppressor of lin-12-like 3 (C. elegans)
Alias_symbol (synonym)KIAA0746
Other aliasSel-1L3
HGNC (Hugo) SEL1L3
LocusID (NCBI) 23231
Atlas_Id 73101
Location 4p15.2  [Link to chromosome band 4p15]
Location_base_pair Starts at 25747427 and ends at 25863595 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEL1L3   29108
Cards
Entrez_Gene (NCBI)SEL1L3  23231  SEL1L family member 3
AliasesSel-1L3
GeneCards (Weizmann)SEL1L3
Ensembl hg19 (Hinxton)ENSG00000091490 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000091490 [Gene_View]  chr4:25747427-25863595 [Contig_View]  SEL1L3 [Vega]
ICGC DataPortalENSG00000091490
TCGA cBioPortalSEL1L3
AceView (NCBI)SEL1L3
Genatlas (Paris)SEL1L3
WikiGenes23231
SOURCE (Princeton)SEL1L3
Genetics Home Reference (NIH)SEL1L3
Genomic and cartography
GoldenPath hg38 (UCSC)SEL1L3  -     chr4:25747427-25863595 -  4p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEL1L3  -     4p15.2   [Description]    (hg19-Feb_2009)
EnsemblSEL1L3 - 4p15.2 [CytoView hg19]  SEL1L3 - 4p15.2 [CytoView hg38]
Mapping of homologs : NCBISEL1L3 [Mapview hg19]  SEL1L3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB018289 AK025282 AK123293 AK289687 AK300219
RefSeq transcript (Entrez)NM_001297592 NM_001297594 NM_015187
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEL1L3
Cluster EST : UnigeneHs.479384 [ NCBI ]
CGAP (NCI)Hs.479384
Alternative Splicing GalleryENSG00000091490
Gene ExpressionSEL1L3 [ NCBI-GEO ]   SEL1L3 [ EBI - ARRAY_EXPRESS ]   SEL1L3 [ SEEK ]   SEL1L3 [ MEM ]
Gene Expression Viewer (FireBrowse)SEL1L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23231
GTEX Portal (Tissue expression)SEL1L3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68CR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68CR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68CR1
Splice isoforms : SwissVarQ68CR1
PhosPhoSitePlusQ68CR1
Domains : Interpro (EBI)ConA-like_dom    Sel1-like    TPR-like_helical_dom   
Domain families : Pfam (Sanger)Sel1 (PF08238)   
Domain families : Pfam (NCBI)pfam08238   
Domain families : Smart (EMBL)SEL1 (SM00671)  
Conserved Domain (NCBI)SEL1L3
DMDM Disease mutations23231
Blocks (Seattle)SEL1L3
SuperfamilyQ68CR1
Human Protein AtlasENSG00000091490
Peptide AtlasQ68CR1
HPRD11105
IPIIPI00470809   IPI00885086   IPI00871817   IPI00967297   IPI00964434   IPI00964726   IPI00967598   IPI00966222   IPI00967884   
Protein Interaction databases
DIP (DOE-UCLA)Q68CR1
IntAct (EBI)Q68CR1
FunCoupENSG00000091490
BioGRIDSEL1L3
STRING (EMBL)SEL1L3
ZODIACSEL1L3
Ontologies - Pathways
QuickGOQ68CR1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSEL1L3
Atlas of Cancer Signalling NetworkSEL1L3
Wikipedia pathwaysSEL1L3
Orthology - Evolution
OrthoDB23231
GeneTree (enSembl)ENSG00000091490
Phylogenetic Trees/Animal Genes : TreeFamSEL1L3
HOVERGENQ68CR1
HOGENOMQ68CR1
Homologs : HomoloGeneSEL1L3
Homology/Alignments : Family Browser (UCSC)SEL1L3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEL1L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEL1L3
dbVarSEL1L3
ClinVarSEL1L3
1000_GenomesSEL1L3 
Exome Variant ServerSEL1L3
ExAC (Exome Aggregation Consortium)SEL1L3 (select the gene name)
Genetic variants : HAPMAP23231
Genomic Variants (DGV)SEL1L3 [DGVbeta]
DECIPHERSEL1L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEL1L3 
Mutations
ICGC Data PortalSEL1L3 
TCGA Data PortalSEL1L3 
Broad Tumor PortalSEL1L3
OASIS PortalSEL1L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEL1L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEL1L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEL1L3
DgiDB (Drug Gene Interaction Database)SEL1L3
DoCM (Curated mutations)SEL1L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEL1L3 (select a term)
intoGenSEL1L3
Cancer3DSEL1L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSEL1L3
Genetic Testing Registry SEL1L3
NextProtQ68CR1 [Medical]
TSGene23231
GENETestsSEL1L3
Huge Navigator SEL1L3 [HugePedia]
snp3D : Map Gene to Disease23231
BioCentury BCIQSEL1L3
ClinGenSEL1L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23231
Chemical/Pharm GKB GenePA165664479
Clinical trialSEL1L3
Miscellaneous
canSAR (ICR)SEL1L3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEL1L3
EVEXSEL1L3
GoPubMedSEL1L3
iHOPSEL1L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:52:37 CEST 2017

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