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SELENBP1 (selenium binding protein 1)

Identity

Alias_symbol (synonym)hSP56
hSBP
LPSB
Other aliasHEL-S-134P
SBP56
SP56
HGNC (Hugo) SELENBP1
LocusID (NCBI) 8991
Atlas_Id 42248
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151364302 and ends at 151372734 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OSGEP (14q11.2) / SELENBP1 (1q21.3)SELENBP1 (1q21.3) / CHURC1 (14q23.3)SELENBP1 (1q21.3) / HCFC1 (Xq28)
SELENBP1 (1q21.3) / SELENBP1 (1q21.3)SELENBP1 (1q21.3) / SUGCT (7p14.1)SELENBP1 (1q21.3) / UBE4B (1p36.22)
SMARCC2 (12q13.2) / SELENBP1 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SELENBP1   10719
Cards
Entrez_Gene (NCBI)SELENBP1  8991  selenium binding protein 1
AliasesHEL-S-134P; LPSB; SBP56; SP56; 
hSBP
GeneCards (Weizmann)SELENBP1
Ensembl hg19 (Hinxton)ENSG00000143416 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143416 [Gene_View]  chr1:151364302-151372734 [Contig_View]  SELENBP1 [Vega]
ICGC DataPortalENSG00000143416
TCGA cBioPortalSELENBP1
AceView (NCBI)SELENBP1
Genatlas (Paris)SELENBP1
WikiGenes8991
SOURCE (Princeton)SELENBP1
Genetics Home Reference (NIH)SELENBP1
Genomic and cartography
GoldenPath hg38 (UCSC)SELENBP1  -     chr1:151364302-151372734 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SELENBP1  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblSELENBP1 - 1q21.3 [CytoView hg19]  SELENBP1 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBISELENBP1 [Mapview hg19]  SELENBP1 [Mapview hg38]
OMIM604188   
Gene and transcription
Genbank (Entrez)AK023875 AK296661 AK298355 AK303815 AK309264
RefSeq transcript (Entrez)NM_001258288 NM_001258289 NM_003944
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SELENBP1
Cluster EST : UnigeneHs.632460 [ NCBI ]
CGAP (NCI)Hs.632460
Alternative Splicing GalleryENSG00000143416
Gene ExpressionSELENBP1 [ NCBI-GEO ]   SELENBP1 [ EBI - ARRAY_EXPRESS ]   SELENBP1 [ SEEK ]   SELENBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SELENBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8991
GTEX Portal (Tissue expression)SELENBP1
Human Protein AtlasENSG00000143416-SELENBP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13228   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13228  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13228
Splice isoforms : SwissVarQ13228
PhosPhoSitePlusQ13228
Domains : Interpro (EBI)Se-bd    WD40/YVTN_repeat-like_dom   
Domain families : Pfam (Sanger)SBP56 (PF05694)   
Domain families : Pfam (NCBI)pfam05694   
Conserved Domain (NCBI)SELENBP1
DMDM Disease mutations8991
Blocks (Seattle)SELENBP1
SuperfamilyQ13228
Human Protein Atlas [tissue]ENSG00000143416-SELENBP1 [tissue]
Peptide AtlasQ13228
HPRD05007
IPIIPI00012303   IPI00954180   IPI01021263   IPI00965813   IPI00942368   IPI00030385   IPI00852953   IPI00852768   IPI00852838   IPI01011716   IPI00893579   IPI00892906   
Protein Interaction databases
DIP (DOE-UCLA)Q13228
IntAct (EBI)Q13228
FunCoupENSG00000143416
BioGRIDSELENBP1
STRING (EMBL)SELENBP1
ZODIACSELENBP1
Ontologies - Pathways
QuickGOQ13228
Ontology : AmiGOfibrillar center  protein binding  extracellular space  nucleolus  cytosol  selenium binding  protein transport  membrane  extracellular exosome  
Ontology : EGO-EBIfibrillar center  protein binding  extracellular space  nucleolus  cytosol  selenium binding  protein transport  membrane  extracellular exosome  
NDEx NetworkSELENBP1
Atlas of Cancer Signalling NetworkSELENBP1
Wikipedia pathwaysSELENBP1
Orthology - Evolution
OrthoDB8991
GeneTree (enSembl)ENSG00000143416
Phylogenetic Trees/Animal Genes : TreeFamSELENBP1
HOVERGENQ13228
HOGENOMQ13228
Homologs : HomoloGeneSELENBP1
Homology/Alignments : Family Browser (UCSC)SELENBP1
Gene fusions - Rearrangements
Fusion: Tumor Portal SELENBP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELENBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELENBP1
dbVarSELENBP1
ClinVarSELENBP1
1000_GenomesSELENBP1 
Exome Variant ServerSELENBP1
ExAC (Exome Aggregation Consortium)ENSG00000143416
GNOMAD BrowserENSG00000143416
Genetic variants : HAPMAP8991
Genomic Variants (DGV)SELENBP1 [DGVbeta]
DECIPHERSELENBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSELENBP1 
Mutations
ICGC Data PortalSELENBP1 
TCGA Data PortalSELENBP1 
Broad Tumor PortalSELENBP1
OASIS PortalSELENBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSELENBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSELENBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SELENBP1
DgiDB (Drug Gene Interaction Database)SELENBP1
DoCM (Curated mutations)SELENBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELENBP1 (select a term)
intoGenSELENBP1
Cancer3DSELENBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604188   
Orphanet
MedgenSELENBP1
Genetic Testing Registry SELENBP1
NextProtQ13228 [Medical]
TSGene8991
GENETestsSELENBP1
Target ValidationSELENBP1
Huge Navigator SELENBP1 [HugePedia]
snp3D : Map Gene to Disease8991
BioCentury BCIQSELENBP1
ClinGenSELENBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8991
Chemical/Pharm GKB GenePA35641
Clinical trialSELENBP1
Miscellaneous
canSAR (ICR)SELENBP1 (select the gene name)
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELENBP1
EVEXSELENBP1
GoPubMedSELENBP1
iHOPSELENBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:10:09 CET 2017

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