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SELENOH (selenoprotein H)

Identity

Other aliasC11orf31
C17orf10
SELH
HGNC (Hugo) SELENOH
LocusID (NCBI) 280636
Atlas_Id 78725
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 57741250 and ends at 57743554 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SELENOH   18251
Cards
Entrez_Gene (NCBI)SELENOH  280636  selenoprotein H
AliasesC11orf31; C17orf10; SELH
GeneCards (Weizmann)SELENOH
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:57741250-57743554 [Contig_View]  SELENOH [Vega]
TCGA cBioPortalSELENOH
AceView (NCBI)SELENOH
Genatlas (Paris)SELENOH
WikiGenes280636
SOURCE (Princeton)SELENOH
Genetics Home Reference (NIH)SELENOH
Genomic and cartography
GoldenPath hg38 (UCSC)SELENOH  -     chr11:57741250-57743554 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SELENOH  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblSELENOH - 11q12.1 [CytoView hg19]  SELENOH - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBISELENOH [Mapview hg19]  SELENOH [Mapview hg38]
OMIM607914   
Gene and transcription
Genbank (Entrez)AF085883 AF536829 AJ276249 AJ276250 BC021122
RefSeq transcript (Entrez)NM_001321335 NM_170746
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SELENOH
Cluster EST : UnigeneHs.745174 [ NCBI ]
CGAP (NCI)Hs.745174
Gene ExpressionSELENOH [ NCBI-GEO ]   SELENOH [ EBI - ARRAY_EXPRESS ]   SELENOH [ SEEK ]   SELENOH [ MEM ]
Gene Expression Viewer (FireBrowse)SELENOH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)280636
GTEX Portal (Tissue expression)SELENOH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZQ5
Splice isoforms : SwissVarQ8IZQ5
PhosPhoSitePlusQ8IZQ5
Domains : Interpro (EBI)Selenoprotein_Rdx-typ    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Rdx (PF10262)   
Domain families : Pfam (NCBI)pfam10262   
Conserved Domain (NCBI)SELENOH
DMDM Disease mutations280636
Blocks (Seattle)SELENOH
SuperfamilyQ8IZQ5
Peptide AtlasQ8IZQ5
HPRD07447
IPIIPI00218054   IPI00982639   IPI00981342   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZQ5
IntAct (EBI)Q8IZQ5
BioGRIDSELENOH
STRING (EMBL)SELENOH
ZODIACSELENOH
Ontologies - Pathways
QuickGOQ8IZQ5
Ontology : AmiGORNA binding  
Ontology : EGO-EBIRNA binding  
NDEx NetworkSELENOH
Atlas of Cancer Signalling NetworkSELENOH
Wikipedia pathwaysSELENOH
Orthology - Evolution
OrthoDB280636
Phylogenetic Trees/Animal Genes : TreeFamSELENOH
HOVERGENQ8IZQ5
HOGENOMQ8IZQ5
Homologs : HomoloGeneSELENOH
Homology/Alignments : Family Browser (UCSC)SELENOH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELENOH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELENOH
dbVarSELENOH
ClinVarSELENOH
1000_GenomesSELENOH 
Exome Variant ServerSELENOH
ExAC (Exome Aggregation Consortium)SELENOH (select the gene name)
Genetic variants : HAPMAP280636
Genomic Variants (DGV)SELENOH [DGVbeta]
DECIPHERSELENOH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSELENOH 
Mutations
ICGC Data PortalSELENOH 
TCGA Data PortalSELENOH 
Broad Tumor PortalSELENOH
OASIS PortalSELENOH [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSELENOH
BioMutasearch SELENOH
DgiDB (Drug Gene Interaction Database)SELENOH
DoCM (Curated mutations)SELENOH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELENOH (select a term)
intoGenSELENOH
Cancer3DSELENOH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607914   
Orphanet
MedgenSELENOH
Genetic Testing Registry SELENOH
NextProtQ8IZQ5 [Medical]
TSGene280636
GENETestsSELENOH
Target ValidationSELENOH
Huge Navigator SELENOH [HugePedia]
snp3D : Map Gene to Disease280636
BioCentury BCIQSELENOH
ClinGenSELENOH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD280636
Chemical/Pharm GKB GenePA25495
Clinical trialSELENOH
Miscellaneous
canSAR (ICR)SELENOH (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELENOH
EVEXSELENOH
GoPubMedSELENOH
iHOPSELENOH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:37:30 CEST 2017

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