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SELENOI (selenoprotein I)

Identity

Other aliasEPT1
SELI
SEPI
HGNC (Hugo) SELENOI
LocusID (NCBI) 85465
Atlas_Id 78686
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 26568954 and ends at 26618759 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SELENOI   29361
Cards
Entrez_Gene (NCBI)SELENOI  85465  selenoprotein I
AliasesEPT1; SELI; SEPI
GeneCards (Weizmann)SELENOI
Ensembl hg19 (Hinxton) [Gene_View]  chr2:26568954-26618759 [Contig_View]  SELENOI [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:26568954-26618759 [Contig_View]  SELENOI [Vega]
TCGA cBioPortalSELENOI
AceView (NCBI)SELENOI
Genatlas (Paris)SELENOI
WikiGenes85465
SOURCE (Princeton)SELENOI
Genetics Home Reference (NIH)SELENOI
Genomic and cartography
GoldenPath hg19 (UCSC)SELENOI  -     chr2:26568954-26618759 +  2p23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SELENOI  -     2p23.3   [Description]    (hg38-Dec_2013)
EnsemblSELENOI - 2p23.3 [CytoView hg19]  SELENOI - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBISELENOI [Mapview hg19]  SELENOI [Mapview hg38]
OMIM607915   
Gene and transcription
Genbank (Entrez)AB051511 AB621826 AK023242 AK091340 AK092710
RefSeq transcript (Entrez)NM_033505
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SELENOI
Cluster EST : UnigeneHs.189073 [ NCBI ]
CGAP (NCI)Hs.189073
Gene ExpressionSELENOI [ NCBI-GEO ]   SELENOI [ EBI - ARRAY_EXPRESS ]   SELENOI [ SEEK ]   SELENOI [ MEM ]
Gene Expression Viewer (FireBrowse)SELENOI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85465
GTEX Portal (Tissue expression)SELENOI
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0D9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0D9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0D9
Splice isoforms : SwissVarQ9C0D9
Catalytic activity : Enzyme2.7.8.1 [ Enzyme-Expasy ]   2.7.8.12.7.8.1 [ IntEnz-EBI ]   2.7.8.1 [ BRENDA ]   2.7.8.1 [ KEGG ]   
PhosPhoSitePlusQ9C0D9
Domaine pattern : Prosite (Expaxy)CDP_ALCOHOL_P_TRANSF (PS00379)   
Domains : Interpro (EBI)CDP-OH_P_trans    CHOPT   
Domain families : Pfam (Sanger)CDP-OH_P_transf (PF01066)   
Domain families : Pfam (NCBI)pfam01066   
Conserved Domain (NCBI)SELENOI
DMDM Disease mutations85465
Blocks (Seattle)SELENOI
SuperfamilyQ9C0D9
Peptide AtlasQ9C0D9
HPRD07616
IPIIPI00028338   IPI00783666   IPI00894558   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0D9
IntAct (EBI)Q9C0D9
BioGRIDSELENOI
STRING (EMBL)SELENOI
ZODIACSELENOI
Ontologies - Pathways
QuickGOQ9C0D9
Ontology : AmiGOethanolaminephosphotransferase activity  ethanolaminephosphotransferase activity  endoplasmic reticulum membrane  phosphatidylethanolamine biosynthetic process  phosphatidylethanolamine biosynthetic process  phosphatidylethanolamine biosynthetic process  integral component of membrane  metal ion binding  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIethanolaminephosphotransferase activity  ethanolaminephosphotransferase activity  endoplasmic reticulum membrane  phosphatidylethanolamine biosynthetic process  phosphatidylethanolamine biosynthetic process  phosphatidylethanolamine biosynthetic process  integral component of membrane  metal ion binding  positive regulation of protein targeting to mitochondrion  
NDEx NetworkSELENOI
Atlas of Cancer Signalling NetworkSELENOI
Wikipedia pathwaysSELENOI
Orthology - Evolution
OrthoDB85465
Phylogenetic Trees/Animal Genes : TreeFamSELENOI
HOVERGENQ9C0D9
HOGENOMQ9C0D9
Homologs : HomoloGeneSELENOI
Homology/Alignments : Family Browser (UCSC)SELENOI
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELENOI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELENOI
dbVarSELENOI
ClinVarSELENOI
1000_GenomesSELENOI 
Exome Variant ServerSELENOI
ExAC (Exome Aggregation Consortium)SELENOI (select the gene name)
Genetic variants : HAPMAP85465
Genomic Variants (DGV)SELENOI [DGVbeta]
DECIPHER (Syndromes)2:26568954-26618759  
CONAN: Copy Number AnalysisSELENOI 
Mutations
ICGC Data PortalSELENOI 
TCGA Data PortalSELENOI 
Broad Tumor PortalSELENOI
OASIS PortalSELENOI [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSELENOI
BioMutasearch SELENOI
DgiDB (Drug Gene Interaction Database)SELENOI
DoCM (Curated mutations)SELENOI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELENOI (select a term)
intoGenSELENOI
Cancer3DSELENOI(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607915   
Orphanet
MedgenSELENOI
Genetic Testing Registry SELENOI
NextProtQ9C0D9 [Medical]
TSGene85465
GENETestsSELENOI
Huge Navigator SELENOI [HugePedia]
snp3D : Map Gene to Disease85465
BioCentury BCIQSELENOI
ClinGenSELENOI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85465
Chemical/Pharm GKB GenePA165696581
Clinical trialSELENOI
Miscellaneous
canSAR (ICR)SELENOI (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELENOI
EVEXSELENOI
GoPubMedSELENOI
iHOPSELENOI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:44 CET 2017

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