Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SELENOK (selenoprotein K)

Identity

Alias_symbol (synonym)SELK
Other aliasHSPC030
HSPC297
HGNC (Hugo) SELENOK
LocusID (NCBI) 58515
Atlas_Id 56218
Location 3p21.1  [Link to chromosome band 3p21]
Location_base_pair Starts at 53884976 and ends at 53892015 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SELENOK   30394
Cards
Entrez_Gene (NCBI)SELENOK  58515  selenoprotein K
AliasesHSPC030; HSPC297; SELK
GeneCards (Weizmann)SELENOK
Ensembl hg19 (Hinxton)ENSG00000113811 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113811 [Gene_View]  chr3:53884976-53892015 [Contig_View]  SELENOK [Vega]
ICGC DataPortalENSG00000113811
TCGA cBioPortalSELENOK
AceView (NCBI)SELENOK
Genatlas (Paris)SELENOK
WikiGenes58515
SOURCE (Princeton)SELENOK
Genetics Home Reference (NIH)SELENOK
Genomic and cartography
GoldenPath hg38 (UCSC)SELENOK  -     chr3:53884976-53892015 -  3p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SELENOK  -     3p21.1   [Description]    (hg19-Feb_2009)
EnsemblSELENOK - 3p21.1 [CytoView hg19]  SELENOK - 3p21.1 [CytoView hg38]
Mapping of homologs : NCBISELENOK [Mapview hg19]  SELENOK [Mapview hg38]
OMIM607916   
Gene and transcription
Genbank (Entrez)AF085359 AF161415 AF537132 AJ712004 AK123406
RefSeq transcript (Entrez)NM_021237
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SELENOK
Cluster EST : UnigeneHs.640242 [ NCBI ]
CGAP (NCI)Hs.640242
Alternative Splicing GalleryENSG00000113811
Gene ExpressionSELENOK [ NCBI-GEO ]   SELENOK [ EBI - ARRAY_EXPRESS ]   SELENOK [ SEEK ]   SELENOK [ MEM ]
Gene Expression Viewer (FireBrowse)SELENOK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58515
GTEX Portal (Tissue expression)SELENOK
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6D0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6D0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6D0
Splice isoforms : SwissVarQ9Y6D0
PhosPhoSitePlusQ9Y6D0
Domains : Interpro (EBI)Se_SelK/SelG   
Domain families : Pfam (Sanger)SelK_SelG (PF10961)   
Domain families : Pfam (NCBI)pfam10961   
Conserved Domain (NCBI)SELENOK
DMDM Disease mutations58515
Blocks (Seattle)SELENOK
SuperfamilyQ9Y6D0
Human Protein AtlasENSG00000113811
Peptide AtlasQ9Y6D0
HPRD07448
IPIIPI00428100   IPI00946461   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6D0
IntAct (EBI)Q9Y6D0
FunCoupENSG00000113811
BioGRIDSELENOK
STRING (EMBL)SELENOK
ZODIACSELENOK
Ontologies - Pathways
QuickGOQ9Y6D0
Ontology : AmiGOimmune system process  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  Golgi apparatus  plasma membrane  calcium ion transport  response to oxidative stress  integral component of membrane  endoplasmic reticulum calcium ion homeostasis  identical protein binding  intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress  
Ontology : EGO-EBIimmune system process  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  Golgi apparatus  plasma membrane  calcium ion transport  response to oxidative stress  integral component of membrane  endoplasmic reticulum calcium ion homeostasis  identical protein binding  intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress  
NDEx NetworkSELENOK
Atlas of Cancer Signalling NetworkSELENOK
Wikipedia pathwaysSELENOK
Orthology - Evolution
OrthoDB58515
GeneTree (enSembl)ENSG00000113811
Phylogenetic Trees/Animal Genes : TreeFamSELENOK
HOVERGENQ9Y6D0
HOGENOMQ9Y6D0
Homologs : HomoloGeneSELENOK
Homology/Alignments : Family Browser (UCSC)SELENOK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELENOK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELENOK
dbVarSELENOK
ClinVarSELENOK
1000_GenomesSELENOK 
Exome Variant ServerSELENOK
ExAC (Exome Aggregation Consortium)SELENOK (select the gene name)
Genetic variants : HAPMAP58515
Genomic Variants (DGV)SELENOK [DGVbeta]
DECIPHERSELENOK [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSELENOK 
Mutations
ICGC Data PortalSELENOK 
TCGA Data PortalSELENOK 
Broad Tumor PortalSELENOK
OASIS PortalSELENOK [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSELENOK
BioMutasearch SELENOK
DgiDB (Drug Gene Interaction Database)SELENOK
DoCM (Curated mutations)SELENOK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELENOK (select a term)
intoGenSELENOK
Cancer3DSELENOK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607916   
Orphanet
MedgenSELENOK
Genetic Testing Registry SELENOK
NextProtQ9Y6D0 [Medical]
TSGene58515
GENETestsSELENOK
Target ValidationSELENOK
Huge Navigator SELENOK [HugePedia]
snp3D : Map Gene to Disease58515
BioCentury BCIQSELENOK
ClinGenSELENOK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58515
Clinical trialSELENOK
Miscellaneous
canSAR (ICR)SELENOK (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELENOK
EVEXSELENOK
GoPubMedSELENOK
iHOPSELENOK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:54:47 CEST 2017

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