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SELENOKP3 (selenoprotein K pseudogene 3)

Identity

Other alias-
HGNC (Hugo) SELENOKP3
LocusID (NCBI) 100287632
Atlas_Id 79779
Location 6q22.31  [Link to chromosome band 6q22]
Location_base_pair Starts at 118782708 and ends at 118783418 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SELENOKP3   53726
Cards
Entrez_Gene (NCBI)SELENOKP3  100287632  selenoprotein K pseudogene 3
Aliases
GeneCards (Weizmann)SELENOKP3
Ensembl hg19 (Hinxton)ENSG00000225549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225549 [Gene_View]  ENSG00000225549 [Sequence]  chr6:118782708-118783418 [Contig_View]  SELENOKP3 [Vega]
ICGC DataPortalENSG00000225549
TCGA cBioPortalSELENOKP3
AceView (NCBI)SELENOKP3
Genatlas (Paris)SELENOKP3
WikiGenes100287632
SOURCE (Princeton)SELENOKP3
Genetics Home Reference (NIH)SELENOKP3
Genomic and cartography
GoldenPath hg38 (UCSC)SELENOKP3  -     chr6:118782708-118783418 +  6q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SELENOKP3  -     6q22.31   [Description]    (hg19-Feb_2009)
EnsemblSELENOKP3 - 6q22.31 [CytoView hg19]  SELENOKP3 - 6q22.31 [CytoView hg38]
Mapping of homologs : NCBISELENOKP3 [Mapview hg19]  SELENOKP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG207496 BG215992
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SELENOKP3
Cluster EST : UnigeneHs.742179 [ NCBI ]
CGAP (NCI)Hs.742179
Alternative Splicing GalleryENSG00000225549
Gene ExpressionSELENOKP3 [ NCBI-GEO ]   SELENOKP3 [ EBI - ARRAY_EXPRESS ]   SELENOKP3 [ SEEK ]   SELENOKP3 [ MEM ]
Gene Expression Viewer (FireBrowse)SELENOKP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100287632
GTEX Portal (Tissue expression)SELENOKP3
Human Protein AtlasENSG00000225549-SELENOKP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SELENOKP3
DMDM Disease mutations100287632
Blocks (Seattle)SELENOKP3
Human Protein Atlas [tissue]ENSG00000225549-SELENOKP3 [tissue]
Protein Interaction databases
FunCoupENSG00000225549
BioGRIDSELENOKP3
STRING (EMBL)SELENOKP3
ZODIACSELENOKP3
Ontologies - Pathways
Huge Navigator SELENOKP3 [HugePedia]
snp3D : Map Gene to Disease100287632
BioCentury BCIQSELENOKP3
ClinGenSELENOKP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287632
Clinical trialSELENOKP3
Miscellaneous
canSAR (ICR)SELENOKP3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELENOKP3
EVEXSELENOKP3
GoPubMedSELENOKP3
iHOPSELENOKP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:28:30 CEST 2018

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