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SELENOM (selenoprotein M)

Identity

Alias_symbol (synonym)SELM
SEPM
Other alias
HGNC (Hugo) SELENOM
LocusID (NCBI) 140606
Atlas_Id 56207
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 31104772 and ends at 31107587 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SELENOM   30397
Cards
Entrez_Gene (NCBI)SELENOM  140606  selenoprotein M
AliasesSELM; SEPM
GeneCards (Weizmann)SELENOM
Ensembl hg19 (Hinxton)ENSG00000198832 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198832 [Gene_View]  chr22:31104772-31107587 [Contig_View]  SELENOM [Vega]
ICGC DataPortalENSG00000198832
TCGA cBioPortalSELENOM
AceView (NCBI)SELENOM
Genatlas (Paris)SELENOM
WikiGenes140606
SOURCE (Princeton)SELENOM
Genetics Home Reference (NIH)SELENOM
Genomic and cartography
GoldenPath hg38 (UCSC)SELENOM  -     chr22:31104772-31107587 -  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SELENOM  -     22q12.2   [Description]    (hg19-Feb_2009)
EnsemblSELENOM - 22q12.2 [CytoView hg19]  SELENOM - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBISELENOM [Mapview hg19]  SELENOM [Mapview hg38]
OMIM610918   
Gene and transcription
Genbank (Entrez)AY043487 BC013421 BC030236 BC042299 BC053846
RefSeq transcript (Entrez)NM_080430
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SELENOM
Cluster EST : UnigeneHs.55940 [ NCBI ]
CGAP (NCI)Hs.55940
Alternative Splicing GalleryENSG00000198832
Gene ExpressionSELENOM [ NCBI-GEO ]   SELENOM [ EBI - ARRAY_EXPRESS ]   SELENOM [ SEEK ]   SELENOM [ MEM ]
Gene Expression Viewer (FireBrowse)SELENOM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140606
GTEX Portal (Tissue expression)SELENOM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWX9
Splice isoforms : SwissVarQ8WWX9
PhosPhoSitePlusQ8WWX9
Domains : Interpro (EBI)Sep15_SelM    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Sep15_SelM (PF08806)   
Domain families : Pfam (NCBI)pfam08806   
Conserved Domain (NCBI)SELENOM
DMDM Disease mutations140606
Blocks (Seattle)SELENOM
SuperfamilyQ8WWX9
Human Protein AtlasENSG00000198832
Peptide AtlasQ8WWX9
HPRD15320
IPIIPI00103471   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWX9
IntAct (EBI)Q8WWX9
FunCoupENSG00000198832
BioGRIDSELENOM
STRING (EMBL)SELENOM
ZODIACSELENOM
Ontologies - Pathways
QuickGOQ8WWX9
Ontology : AmiGOprotein binding  endoplasmic reticulum  Golgi apparatus  perinuclear region of cytoplasm  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  Golgi apparatus  perinuclear region of cytoplasm  
NDEx NetworkSELENOM
Atlas of Cancer Signalling NetworkSELENOM
Wikipedia pathwaysSELENOM
Orthology - Evolution
OrthoDB140606
GeneTree (enSembl)ENSG00000198832
Phylogenetic Trees/Animal Genes : TreeFamSELENOM
HOVERGENQ8WWX9
HOGENOMQ8WWX9
Homologs : HomoloGeneSELENOM
Homology/Alignments : Family Browser (UCSC)SELENOM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELENOM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELENOM
dbVarSELENOM
ClinVarSELENOM
1000_GenomesSELENOM 
Exome Variant ServerSELENOM
ExAC (Exome Aggregation Consortium)SELENOM (select the gene name)
Genetic variants : HAPMAP140606
Genomic Variants (DGV)SELENOM [DGVbeta]
DECIPHERSELENOM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSELENOM 
Mutations
ICGC Data PortalSELENOM 
TCGA Data PortalSELENOM 
Broad Tumor PortalSELENOM
OASIS PortalSELENOM [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSELENOM
BioMutasearch SELENOM
DgiDB (Drug Gene Interaction Database)SELENOM
DoCM (Curated mutations)SELENOM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELENOM (select a term)
intoGenSELENOM
Cancer3DSELENOM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610918   
Orphanet
MedgenSELENOM
Genetic Testing Registry SELENOM
NextProtQ8WWX9 [Medical]
TSGene140606
GENETestsSELENOM
Target ValidationSELENOM
Huge Navigator SELENOM [HugePedia]
snp3D : Map Gene to Disease140606
BioCentury BCIQSELENOM
ClinGenSELENOM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140606
Clinical trialSELENOM
Miscellaneous
canSAR (ICR)SELENOM (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELENOM
EVEXSELENOM
GoPubMedSELENOM
iHOPSELENOM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:54:48 CEST 2017

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