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SELENON (selenoprotein N)

Identity

Alias_namesRSMD1
MDRS1
SEPN1
rigid spine muscular dystrophy 1
selenoprotein N, 1
Alias_symbol (synonym)SELN
RSS
Other aliasCFTD
HGNC (Hugo) SELENON
LocusID (NCBI) 57190
Atlas_Id 56019
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 25800176 and ends at 25818222 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SELENON   15999
LRG (Locus Reference Genomic)LRG_857
Cards
Entrez_Gene (NCBI)SELENON  57190  selenoprotein N
AliasesCFTD; MDRS1; RSMD1; RSS; 
SELN; SEPN1
GeneCards (Weizmann)SELENON
Ensembl hg19 (Hinxton)ENSG00000162430 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162430 [Gene_View]  chr1:25800176-25818222 [Contig_View]  SELENON [Vega]
ICGC DataPortalENSG00000162430
TCGA cBioPortalSELENON
AceView (NCBI)SELENON
Genatlas (Paris)SELENON
WikiGenes57190
SOURCE (Princeton)SELENON
Genetics Home Reference (NIH)SELENON
Genomic and cartography
GoldenPath hg38 (UCSC)SELENON  -     chr1:25800176-25818222 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SELENON  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblSELENON - 1p36.11 [CytoView hg19]  SELENON - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBISELENON [Mapview hg19]  SELENON [Mapview hg38]
OMIM255310   602771   606210   
Gene and transcription
Genbank (Entrez)AA613025 AF166125 AJ306399 AK172860 AK308457
RefSeq transcript (Entrez)NM_020451 NM_206926
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SELENON
Cluster EST : UnigeneHs.323396 [ NCBI ]
CGAP (NCI)Hs.323396
Alternative Splicing GalleryENSG00000162430
Gene ExpressionSELENON [ NCBI-GEO ]   SELENON [ EBI - ARRAY_EXPRESS ]   SELENON [ SEEK ]   SELENON [ MEM ]
Gene Expression Viewer (FireBrowse)SELENON [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57190
GTEX Portal (Tissue expression)SELENON
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZV5
Splice isoforms : SwissVarQ9NZV5
PhosPhoSitePlusQ9NZV5
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF_hand_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SELENON
DMDM Disease mutations57190
Blocks (Seattle)SELENON
SuperfamilyQ9NZV5
Human Protein AtlasENSG00000162430
Peptide AtlasQ9NZV5
HPRD05867
IPIIPI00413784   IPI00455204   IPI01012496   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZV5
IntAct (EBI)Q9NZV5
FunCoupENSG00000162430
BioGRIDSELENON
STRING (EMBL)SELENON
ZODIACSELENON
Ontologies - Pathways
QuickGOQ9NZV5
Ontology : AmiGOrespiratory system process  molecular_function  calcium ion binding  protein binding  endoplasmic reticulum membrane  mitochondrion organization  biological_process  skeletal muscle satellite cell differentiation  skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration  positive regulation of skeletal muscle cell proliferation  response to muscle activity involved in regulation of muscle adaptation  oxidoreductase activity  multicellular organismal response to stress  cellular response to oxidative stress  lung alveolus development  skeletal muscle fiber development  calcium ion homeostasis  oxidation-reduction process  regulation of ryanodine-sensitive calcium-release channel activity  cellular response to caffeine  positive regulation of response to oxidative stress  
Ontology : EGO-EBIrespiratory system process  molecular_function  calcium ion binding  protein binding  endoplasmic reticulum membrane  mitochondrion organization  biological_process  skeletal muscle satellite cell differentiation  skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration  positive regulation of skeletal muscle cell proliferation  response to muscle activity involved in regulation of muscle adaptation  oxidoreductase activity  multicellular organismal response to stress  cellular response to oxidative stress  lung alveolus development  skeletal muscle fiber development  calcium ion homeostasis  oxidation-reduction process  regulation of ryanodine-sensitive calcium-release channel activity  cellular response to caffeine  positive regulation of response to oxidative stress  
NDEx NetworkSELENON
Atlas of Cancer Signalling NetworkSELENON
Wikipedia pathwaysSELENON
Orthology - Evolution
OrthoDB57190
GeneTree (enSembl)ENSG00000162430
Phylogenetic Trees/Animal Genes : TreeFamSELENON
HOVERGENQ9NZV5
HOGENOMQ9NZV5
Homologs : HomoloGeneSELENON
Homology/Alignments : Family Browser (UCSC)SELENON
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELENON [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELENON
dbVarSELENON
ClinVarSELENON
1000_GenomesSELENON 
Exome Variant ServerSELENON
ExAC (Exome Aggregation Consortium)SELENON (select the gene name)
Genetic variants : HAPMAP57190
Genomic Variants (DGV)SELENON [DGVbeta]
DECIPHERSELENON [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSELENON 
Mutations
ICGC Data PortalSELENON 
TCGA Data PortalSELENON 
Broad Tumor PortalSELENON
OASIS PortalSELENON [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSELENON
BioMutasearch SELENON
DgiDB (Drug Gene Interaction Database)SELENON
DoCM (Curated mutations)SELENON (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELENON (select a term)
intoGenSELENON
Cancer3DSELENON(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM255310    602771    606210   
Orphanet
MedgenSELENON
Genetic Testing Registry SELENON
NextProtQ9NZV5 [Medical]
TSGene57190
GENETestsSELENON
Target ValidationSELENON
Huge Navigator SELENON [HugePedia]
snp3D : Map Gene to Disease57190
BioCentury BCIQSELENON
ClinGenSELENON
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57190
Chemical/Pharm GKB GenePA38079
Clinical trialSELENON
Miscellaneous
canSAR (ICR)SELENON (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELENON
EVEXSELENON
GoPubMedSELENON
iHOPSELENON
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:06:51 CEST 2017

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