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SELENOO (selenoprotein O)

Identity

Other aliasSELO
HGNC (Hugo) SELENOO
LocusID (NCBI) 83642
Atlas_Id 78809
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 50639408 and ends at 50656045 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SELENOO   30395
Cards
Entrez_Gene (NCBI)SELENOO  83642  selenoprotein O
AliasesSELO
GeneCards (Weizmann)SELENOO
Ensembl hg19 (Hinxton) [Gene_View]  chr22:50639408-50656045 [Contig_View]  SELENOO [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:50639408-50656045 [Contig_View]  SELENOO [Vega]
TCGA cBioPortalSELENOO
AceView (NCBI)SELENOO
Genatlas (Paris)SELENOO
WikiGenes83642
SOURCE (Princeton)SELENOO
Genetics Home Reference (NIH)SELENOO
Genomic and cartography
GoldenPath hg19 (UCSC)SELENOO  -     chr22:50639408-50656045 +  22q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SELENOO  -     22q13.33   [Description]    (hg38-Dec_2013)
EnsemblSELENOO - 22q13.33 [CytoView hg19]  SELENOO - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBISELENOO [Mapview hg19]  SELENOO [Mapview hg38]
OMIM607917   
Gene and transcription
Genbank (Entrez)AF274946 AY324823 BC001099 BC020510 BC032384
RefSeq transcript (Entrez)NM_031454
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SELENOO
Cluster EST : UnigeneHs.365405 [ NCBI ]
CGAP (NCI)Hs.365405
Gene ExpressionSELENOO [ NCBI-GEO ]   SELENOO [ EBI - ARRAY_EXPRESS ]   SELENOO [ SEEK ]   SELENOO [ MEM ]
Gene Expression Viewer (FireBrowse)SELENOO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83642
GTEX Portal (Tissue expression)SELENOO
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVL4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVL4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVL4
Splice isoforms : SwissVarQ9BVL4
PhosPhoSitePlusQ9BVL4
Domains : Interpro (EBI)UPF0061   
Domain families : Pfam (Sanger)UPF0061 (PF02696)   
Domain families : Pfam (NCBI)pfam02696   
Conserved Domain (NCBI)SELENOO
DMDM Disease mutations83642
Blocks (Seattle)SELENOO
SuperfamilyQ9BVL4
Peptide AtlasQ9BVL4
HPRD07449
IPIIPI00031666   IPI00382473   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVL4
IntAct (EBI)Q9BVL4
BioGRIDSELENOO
STRING (EMBL)SELENOO
ZODIACSELENOO
Ontologies - Pathways
QuickGOQ9BVL4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSELENOO
Atlas of Cancer Signalling NetworkSELENOO
Wikipedia pathwaysSELENOO
Orthology - Evolution
OrthoDB83642
Phylogenetic Trees/Animal Genes : TreeFamSELENOO
HOVERGENQ9BVL4
HOGENOMQ9BVL4
Homologs : HomoloGeneSELENOO
Homology/Alignments : Family Browser (UCSC)SELENOO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELENOO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELENOO
dbVarSELENOO
ClinVarSELENOO
1000_GenomesSELENOO 
Exome Variant ServerSELENOO
ExAC (Exome Aggregation Consortium)SELENOO (select the gene name)
Genetic variants : HAPMAP83642
Genomic Variants (DGV)SELENOO [DGVbeta]
DECIPHER (Syndromes)22:50639408-50656045  
CONAN: Copy Number AnalysisSELENOO 
Mutations
ICGC Data PortalSELENOO 
TCGA Data PortalSELENOO 
Broad Tumor PortalSELENOO
OASIS PortalSELENOO [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSELENOO
BioMutasearch SELENOO
DgiDB (Drug Gene Interaction Database)SELENOO
DoCM (Curated mutations)SELENOO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELENOO (select a term)
intoGenSELENOO
Cancer3DSELENOO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607917   
Orphanet
MedgenSELENOO
Genetic Testing Registry SELENOO
NextProtQ9BVL4 [Medical]
TSGene83642
GENETestsSELENOO
Huge Navigator SELENOO [HugePedia]
snp3D : Map Gene to Disease83642
BioCentury BCIQSELENOO
ClinGenSELENOO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83642
Clinical trialSELENOO
Miscellaneous
canSAR (ICR)SELENOO (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELENOO
EVEXSELENOO
GoPubMedSELENOO
iHOPSELENOO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:45 CET 2017

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