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SELENOT (selenoprotein T)

Identity

Other aliasSELT
HGNC (Hugo) SELENOT
LocusID (NCBI) 51714
Atlas_Id 78745
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 150603263 and ends at 150630447 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SELENOT   18136
Cards
Entrez_Gene (NCBI)SELENOT  51714  selenoprotein T
AliasesSELT
GeneCards (Weizmann)SELENOT
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:150603263-150630447 [Contig_View]  SELENOT [Vega]
TCGA cBioPortalSELENOT
AceView (NCBI)SELENOT
Genatlas (Paris)SELENOT
WikiGenes51714
SOURCE (Princeton)SELENOT
Genetics Home Reference (NIH)SELENOT
Genomic and cartography
GoldenPath hg38 (UCSC)SELENOT  -     chr3:150603263-150630447 +  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SELENOT  -     3q25.1   [Description]    (hg19-Feb_2009)
EnsemblSELENOT - 3q25.1 [CytoView hg19]  SELENOT - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBISELENOT [Mapview hg19]  SELENOT [Mapview hg38]
OMIM607912   
Gene and transcription
Genbank (Entrez)AF131856 AF195141 AI686634 AK075006 AK300315
RefSeq transcript (Entrez)NM_016275
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SELENOT
Cluster EST : UnigeneHs.369052 [ NCBI ]
CGAP (NCI)Hs.369052
Gene ExpressionSELENOT [ NCBI-GEO ]   SELENOT [ EBI - ARRAY_EXPRESS ]   SELENOT [ SEEK ]   SELENOT [ MEM ]
Gene Expression Viewer (FireBrowse)SELENOT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51714
GTEX Portal (Tissue expression)SELENOT
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62341   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62341  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62341
Splice isoforms : SwissVarP62341
PhosPhoSitePlusP62341
Domains : Interpro (EBI)Selenoprotein_Rdx-typ    Selenoprotein_T    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Rdx (PF10262)   
Domain families : Pfam (NCBI)pfam10262   
Conserved Domain (NCBI)SELENOT
DMDM Disease mutations51714
Blocks (Seattle)SELENOT
SuperfamilyP62341
Peptide AtlasP62341
HPRD07446
IPIIPI00008351   IPI00940122   IPI00947501   
Protein Interaction databases
DIP (DOE-UCLA)P62341
IntAct (EBI)P62341
BioGRIDSELENOT
STRING (EMBL)SELENOT
ZODIACSELENOT
Ontologies - Pathways
QuickGOP62341
Ontology : AmiGOselenocysteine incorporation  thioredoxin-disulfide reductase activity  endoplasmic reticulum  endoplasmic reticulum membrane  positive regulation of cytosolic calcium ion concentration  selenium binding  response to glucose  integral component of membrane  pancreas development  insulin secretion involved in cellular response to glucose stimulus  glucose homeostasis  cell redox homeostasis  oxidation-reduction process  positive regulation of growth hormone secretion  cellular oxidant detoxification  
Ontology : EGO-EBIselenocysteine incorporation  thioredoxin-disulfide reductase activity  endoplasmic reticulum  endoplasmic reticulum membrane  positive regulation of cytosolic calcium ion concentration  selenium binding  response to glucose  integral component of membrane  pancreas development  insulin secretion involved in cellular response to glucose stimulus  glucose homeostasis  cell redox homeostasis  oxidation-reduction process  positive regulation of growth hormone secretion  cellular oxidant detoxification  
NDEx NetworkSELENOT
Atlas of Cancer Signalling NetworkSELENOT
Wikipedia pathwaysSELENOT
Orthology - Evolution
OrthoDB51714
Phylogenetic Trees/Animal Genes : TreeFamSELENOT
HOVERGENP62341
HOGENOMP62341
Homologs : HomoloGeneSELENOT
Homology/Alignments : Family Browser (UCSC)SELENOT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELENOT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELENOT
dbVarSELENOT
ClinVarSELENOT
1000_GenomesSELENOT 
Exome Variant ServerSELENOT
ExAC (Exome Aggregation Consortium)SELENOT (select the gene name)
Genetic variants : HAPMAP51714
Genomic Variants (DGV)SELENOT [DGVbeta]
DECIPHERSELENOT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSELENOT 
Mutations
ICGC Data PortalSELENOT 
TCGA Data PortalSELENOT 
Broad Tumor PortalSELENOT
OASIS PortalSELENOT [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSELENOT
BioMutasearch SELENOT
DgiDB (Drug Gene Interaction Database)SELENOT
DoCM (Curated mutations)SELENOT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELENOT (select a term)
intoGenSELENOT
Cancer3DSELENOT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607912   
Orphanet
MedgenSELENOT
Genetic Testing Registry SELENOT
NextProtP62341 [Medical]
TSGene51714
GENETestsSELENOT
Target ValidationSELENOT
Huge Navigator SELENOT [HugePedia]
snp3D : Map Gene to Disease51714
BioCentury BCIQSELENOT
ClinGenSELENOT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51714
Clinical trialSELENOT
Miscellaneous
canSAR (ICR)SELENOT (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELENOT
EVEXSELENOT
GoPubMedSELENOT
iHOPSELENOT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:40:19 CEST 2017

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