Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SELENOV (selenoprotein V)

Identity

Other aliasSELV
HGNC (Hugo) SELENOV
LocusID (NCBI) 348303
Atlas_Id 78647
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39515113 and ends at 39520686 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SELENOV   30399
Cards
Entrez_Gene (NCBI)SELENOV  348303  selenoprotein V
AliasesSELV
GeneCards (Weizmann)SELENOV
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:39515113-39520686 [Contig_View]  SELENOV [Vega]
TCGA cBioPortalSELENOV
AceView (NCBI)SELENOV
Genatlas (Paris)SELENOV
WikiGenes348303
SOURCE (Princeton)SELENOV
Genetics Home Reference (NIH)SELENOV
Genomic and cartography
GoldenPath hg38 (UCSC)SELENOV  -     chr19:39515113-39520686 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SELENOV  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblSELENOV - 19q13.2 [CytoView hg19]  SELENOV - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBISELENOV [Mapview hg19]  SELENOV [Mapview hg38]
OMIM607919   
Gene and transcription
Genbank (Entrez)AY324825 BC117331 HY191948
RefSeq transcript (Entrez)NM_001350809 NM_182704
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SELENOV
Cluster EST : UnigeneHs.319284 [ NCBI ]
CGAP (NCI)Hs.319284
Gene ExpressionSELENOV [ NCBI-GEO ]   SELENOV [ EBI - ARRAY_EXPRESS ]   SELENOV [ SEEK ]   SELENOV [ MEM ]
Gene Expression Viewer (FireBrowse)SELENOV [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348303
GTEX Portal (Tissue expression)SELENOV
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59797   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59797  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59797
Splice isoforms : SwissVarP59797
PhosPhoSitePlusP59797
Domains : Interpro (EBI)Selenoprotein_Rdx-typ    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Rdx (PF10262)   
Domain families : Pfam (NCBI)pfam10262   
Conserved Domain (NCBI)SELENOV
DMDM Disease mutations348303
Blocks (Seattle)SELENOV
SuperfamilyP59797
Peptide AtlasP59797
HPRD12134
IPIIPI00719097   
Protein Interaction databases
DIP (DOE-UCLA)P59797
IntAct (EBI)P59797
BioGRIDSELENOV
STRING (EMBL)SELENOV
ZODIACSELENOV
Ontologies - Pathways
QuickGOP59797
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkSELENOV
Atlas of Cancer Signalling NetworkSELENOV
Wikipedia pathwaysSELENOV
Orthology - Evolution
OrthoDB348303
Phylogenetic Trees/Animal Genes : TreeFamSELENOV
HOVERGENP59797
HOGENOMP59797
Homologs : HomoloGeneSELENOV
Homology/Alignments : Family Browser (UCSC)SELENOV
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELENOV [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELENOV
dbVarSELENOV
ClinVarSELENOV
1000_GenomesSELENOV 
Exome Variant ServerSELENOV
ExAC (Exome Aggregation Consortium)SELENOV (select the gene name)
Genetic variants : HAPMAP348303
Genomic Variants (DGV)SELENOV [DGVbeta]
DECIPHERSELENOV [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSELENOV 
Mutations
ICGC Data PortalSELENOV 
TCGA Data PortalSELENOV 
Broad Tumor PortalSELENOV
OASIS PortalSELENOV [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSELENOV
BioMutasearch SELENOV
DgiDB (Drug Gene Interaction Database)SELENOV
DoCM (Curated mutations)SELENOV (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELENOV (select a term)
intoGenSELENOV
Cancer3DSELENOV(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607919   
Orphanet
MedgenSELENOV
Genetic Testing Registry SELENOV
NextProtP59797 [Medical]
TSGene348303
GENETestsSELENOV
Target ValidationSELENOV
Huge Navigator SELENOV [HugePedia]
snp3D : Map Gene to Disease348303
BioCentury BCIQSELENOV
ClinGenSELENOV
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348303
Clinical trialSELENOV
Miscellaneous
canSAR (ICR)SELENOV (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELENOV
EVEXSELENOV
GoPubMedSELENOV
iHOPSELENOV
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:40:19 CEST 2017

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