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SELENOW (selenoprotein W)

Identity

Alias_namesSEPW1
selenoprotein W
Alias_symbol (synonym)SELW
Other aliasselW
HGNC (Hugo) SELENOW
LocusID (NCBI) 6415
Atlas_Id 56195
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 47778585 and ends at 47784686 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SELENOW   10752
Cards
Entrez_Gene (NCBI)SELENOW  6415  selenoprotein W
AliasesSEPW1; selW
GeneCards (Weizmann)SELENOW
Ensembl hg19 (Hinxton)ENSG00000178980 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178980 [Gene_View]  chr19:47778585-47784686 [Contig_View]  SELENOW [Vega]
ICGC DataPortalENSG00000178980
TCGA cBioPortalSELENOW
AceView (NCBI)SELENOW
Genatlas (Paris)SELENOW
WikiGenes6415
SOURCE (Princeton)SELENOW
Genetics Home Reference (NIH)SELENOW
Genomic and cartography
GoldenPath hg38 (UCSC)SELENOW  -     chr19:47778585-47784686 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SELENOW  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblSELENOW - 19q13.33 [CytoView hg19]  SELENOW - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBISELENOW [Mapview hg19]  SELENOW [Mapview hg38]
OMIM603235   
Gene and transcription
Genbank (Entrez)AF015283 AK026717 AK091604 BC000581 BC032546
RefSeq transcript (Entrez)NM_003009
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SELENOW
Cluster EST : UnigeneHs.631549 [ NCBI ]
CGAP (NCI)Hs.631549
Alternative Splicing GalleryENSG00000178980
Gene ExpressionSELENOW [ NCBI-GEO ]   SELENOW [ EBI - ARRAY_EXPRESS ]   SELENOW [ SEEK ]   SELENOW [ MEM ]
Gene Expression Viewer (FireBrowse)SELENOW [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6415
GTEX Portal (Tissue expression)SELENOW
Protein : pattern, domain, 3D structure
UniProt/SwissProtP63302   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP63302  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP63302
Splice isoforms : SwissVarP63302
PhosPhoSitePlusP63302
Domains : Interpro (EBI)Selenoprotein_Rdx-typ    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Rdx (PF10262)   
Domain families : Pfam (NCBI)pfam10262   
Conserved Domain (NCBI)SELENOW
DMDM Disease mutations6415
Blocks (Seattle)SELENOW
SuperfamilyP63302
Human Protein AtlasENSG00000178980
Peptide AtlasP63302
HPRD08377
IPIIPI00966892   
Protein Interaction databases
DIP (DOE-UCLA)P63302
IntAct (EBI)P63302
FunCoupENSG00000178980
BioGRIDSELENOW
STRING (EMBL)SELENOW
ZODIACSELENOW
Ontologies - Pathways
QuickGOP63302
Ontology : AmiGOcytoplasm  antioxidant activity  cellular oxidant detoxification  
Ontology : EGO-EBIcytoplasm  antioxidant activity  cellular oxidant detoxification  
NDEx NetworkSELENOW
Atlas of Cancer Signalling NetworkSELENOW
Wikipedia pathwaysSELENOW
Orthology - Evolution
OrthoDB6415
GeneTree (enSembl)ENSG00000178980
Phylogenetic Trees/Animal Genes : TreeFamSELENOW
HOVERGENP63302
HOGENOMP63302
Homologs : HomoloGeneSELENOW
Homology/Alignments : Family Browser (UCSC)SELENOW
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELENOW [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELENOW
dbVarSELENOW
ClinVarSELENOW
1000_GenomesSELENOW 
Exome Variant ServerSELENOW
ExAC (Exome Aggregation Consortium)SELENOW (select the gene name)
Genetic variants : HAPMAP6415
Genomic Variants (DGV)SELENOW [DGVbeta]
DECIPHERSELENOW [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSELENOW 
Mutations
ICGC Data PortalSELENOW 
TCGA Data PortalSELENOW 
Broad Tumor PortalSELENOW
OASIS PortalSELENOW [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSELENOW
BioMutasearch SELENOW
DgiDB (Drug Gene Interaction Database)SELENOW
DoCM (Curated mutations)SELENOW (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELENOW (select a term)
intoGenSELENOW
Cancer3DSELENOW(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603235   
Orphanet
MedgenSELENOW
Genetic Testing Registry SELENOW
NextProtP63302 [Medical]
TSGene6415
GENETestsSELENOW
Target ValidationSELENOW
Huge Navigator SELENOW [HugePedia]
snp3D : Map Gene to Disease6415
BioCentury BCIQSELENOW
ClinGenSELENOW
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6415
Chemical/Pharm GKB GenePA35673
Clinical trialSELENOW
Miscellaneous
canSAR (ICR)SELENOW (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELENOW
EVEXSELENOW
GoPubMedSELENOW
iHOPSELENOW
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:30:23 CEST 2017

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