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SELL (selectin L)

Identity

Other namesCD62L
LAM1
LECAM1
LEU8
LNHR
LSEL
LYAM1
PLNHR
TQ1
HGNC (Hugo) SELL
LocusID (NCBI) 6402
Location 1q24.2
Location_base_pair Starts at 169659806 and ends at 169680843 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SELL   10720
Cards
Entrez_Gene (NCBI)SELL  6402  selectin L
GeneCards (Weizmann)SELL
Ensembl (Hinxton)ENSG00000188404 [Gene_View]  chr1:169659806-169680843 [Contig_View]  SELL [Vega]
ICGC DataPortalENSG00000188404
AceView (NCBI)SELL
Genatlas (Paris)SELL
WikiGenes6402
SOURCE (Princeton)NM_000655
Genomic and cartography
GoldenPath (UCSC)SELL  -  1q24.2   chr1:169659806-169680843 -  1q24.2   [Description]    (hg19-Feb_2009)
EnsemblSELL - 1q24.2 [CytoView]
Mapping of homologs : NCBISELL [Mapview]
OMIM153240   
Gene and transcription
Genbank (Entrez)AI253539 AJ246000 AK225713 AK298705 AK312673
RefSeq transcript (Entrez)NM_000655
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_016132 NT_004487 NW_001838533 NW_004929293
Consensus coding sequences : CCDS (NCBI)SELL
Cluster EST : UnigeneHs.728756 [ NCBI ]
CGAP (NCI)Hs.728756
Alternative Splicing : Fast-db (Paris)GSHG0002726
Alternative Splicing GalleryENSG00000188404
Gene ExpressionSELL [ NCBI-GEO ]     SELL [ SEEK ]   SELL [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP14151 (Uniprot)
NextProtP14151  [Medical]
With graphics : InterProP14151
Splice isoforms : SwissVarP14151 (Swissvar)
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    SUSHI (PS50923)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold    EG-like_dom    EGF-like_CS    L-selectin    Selectin_superfamily    Sushi_SCR_CCP   
Related proteins : CluSTrP14151
Domain families : Pfam (Sanger)EGF (PF00008)    Lectin_C (PF00059)    Sushi (PF00084)   
Domain families : Pfam (NCBI)pfam00008    pfam00059    pfam00084   
Domain families : Smart (EMBL)CCP (SM00032)  CLECT (SM00034)  EGF (SM00181)  
DMDM Disease mutations6402
Blocks (Seattle)P14151
PDB (SRS)1KJB    2LGF    3CFW   
PDB (PDBSum)1KJB    2LGF    3CFW   
PDB (IMB)1KJB    2LGF    3CFW   
PDB (RSDB)1KJB    2LGF    3CFW   
Human Protein AtlasENSG00000188404
Peptide AtlasP14151
IPIIPI00218795   
Protein Interaction databases
DIP (DOE-UCLA)P14151
IntAct (EBI)P14151
FunCoupENSG00000188404
BioGRIDSELL
IntegromeDBSELL
STRING (EMBL)SELL
Ontologies - Pathways
QuickGOP14151
Ontology : AmiGOprotease binding  protein binding  plasma membrane  integral component of plasma membrane  cell adhesion  blood coagulation  heparin binding  external side of plasma membrane  carbohydrate binding  response to ATP  glycosphingolipid binding  regulation of immune response  cell adhesion molecule binding  leukocyte migration  
Ontology : EGO-EBIprotease binding  protein binding  plasma membrane  integral component of plasma membrane  cell adhesion  blood coagulation  heparin binding  external side of plasma membrane  carbohydrate binding  response to ATP  glycosphingolipid binding  regulation of immune response  cell adhesion molecule binding  leukocyte migration  
Pathways : BIOCARTAAdhesion and Diapedesis of Lymphocytes [Genes]    Adhesion Molecules on Lymphocyte [Genes]    Monocyte and its Surface Molecules [Genes]    Neutrophil and Its Surface Molecules [Genes]    Adhesion and Diapedesis of Granulocytes [Genes]   
Pathways : KEGGCell adhesion molecules (CAMs)   
Protein Interaction DatabaseSELL
Wikipedia pathwaysSELL
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SELL
SNP (GeneSNP Utah)SELL
SNP : HGBaseSELL
Genetic variants : HAPMAPSELL
1000_GenomesSELL 
ICGC programENSG00000188404 
CONAN: Copy Number AnalysisSELL 
Somatic Mutations in Cancer : COSMICSELL 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)1:169659806-169680843
Mutations and Diseases : HGMDSELL
OMIM153240   
MedgenSELL
GENETestsSELL
Disease Genetic AssociationSELL
Huge Navigator SELL [HugePedia]  SELL [HugeCancerGEM]
Genomic VariantsSELL  SELL [DGVbeta]
Exome VariantSELL
dbVarSELL
ClinVarSELL
snp3D : Map Gene to Disease6402
General knowledge
Homologs : HomoloGeneSELL
Homology/Alignments : Family Browser (UCSC)SELL
Phylogenetic Trees/Animal Genes : TreeFamSELL
Chemical/Protein Interactions : CTD6402
Chemical/Pharm GKB GenePA35642
Clinical trialSELL
Cancer Resource (Charite)ENSG00000188404
Other databases
Probes
Litterature
PubMed175 Pubmed reference(s) in Entrez
CoreMineSELL
GoPubMedSELL
iHOPSELL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:55:43 CET 2014

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