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SELL (selectin L)

Identity

Alias_namesLYAM1
LNHR
lymphocyte adhesion molecule 1
Alias_symbol (synonym)LSEL
LAM1
LAM-1
hLHRc
Leu-8
Lyam-1
PLNHR
CD62L
HGNC (Hugo) SELL
LocusID (NCBI) 6402
Atlas_Id 42249
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 169659806 and ends at 169680843 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
UCK2 (1q24.1) / SELL (1q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SELL   10720
Cards
Entrez_Gene (NCBI)SELL  6402  selectin L
AliasesCD62L; LAM1; LECAM1; LEU8; 
LNHR; LSEL; LYAM1; PLNHR; TQ1
GeneCards (Weizmann)SELL
Ensembl hg19 (Hinxton)ENSG00000188404 [Gene_View]  chr1:169659806-169680843 [Contig_View]  SELL [Vega]
Ensembl hg38 (Hinxton)ENSG00000188404 [Gene_View]  chr1:169659806-169680843 [Contig_View]  SELL [Vega]
ICGC DataPortalENSG00000188404
TCGA cBioPortalSELL
AceView (NCBI)SELL
Genatlas (Paris)SELL
WikiGenes6402
SOURCE (Princeton)SELL
Genetics Home Reference (NIH)SELL
Genomic and cartography
GoldenPath hg19 (UCSC)SELL  -     chr1:169659806-169680843 -  1q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SELL  -     1q24.2   [Description]    (hg38-Dec_2013)
EnsemblSELL - 1q24.2 [CytoView hg19]  SELL - 1q24.2 [CytoView hg38]
Mapping of homologs : NCBISELL [Mapview hg19]  SELL [Mapview hg38]
OMIM153240   
Gene and transcription
Genbank (Entrez)AB583235 AI253539 AJ246000 AK225713 AK298705
RefSeq transcript (Entrez)NM_000655
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_016132 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)SELL
Cluster EST : UnigeneHs.728756 [ NCBI ]
CGAP (NCI)Hs.728756
Alternative Splicing GalleryENSG00000188404
Gene ExpressionSELL [ NCBI-GEO ]   SELL [ EBI - ARRAY_EXPRESS ]   SELL [ SEEK ]   SELL [ MEM ]
Gene Expression Viewer (FireBrowse)SELL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6402
GTEX Portal (Tissue expression)SELL
Protein : pattern, domain, 3D structure
UniProt/SwissProtP14151   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP14151  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP14151
Splice isoforms : SwissVarP14151
PhosPhoSitePlusP14151
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    SUSHI (PS50923)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold    EGF-like_CS    EGF-like_dom    L-selectin    Selectin_superfamily    Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)Lectin_C (PF00059)    Sushi (PF00084)   
Domain families : Pfam (NCBI)pfam00059    pfam00084   
Domain families : Smart (EMBL)CCP (SM00032)  CLECT (SM00034)  EGF (SM00181)  
Conserved Domain (NCBI)SELL
DMDM Disease mutations6402
Blocks (Seattle)SELL
PDB (SRS)1KJB    2LGF    3CFW   
PDB (PDBSum)1KJB    2LGF    3CFW   
PDB (IMB)1KJB    2LGF    3CFW   
PDB (RSDB)1KJB    2LGF    3CFW   
Structural Biology KnowledgeBase1KJB    2LGF    3CFW   
SCOP (Structural Classification of Proteins)1KJB    2LGF    3CFW   
CATH (Classification of proteins structures)1KJB    2LGF    3CFW   
SuperfamilyP14151
Human Protein AtlasENSG00000188404
Peptide AtlasP14151
IPIIPI00218795   
Protein Interaction databases
DIP (DOE-UCLA)P14151
IntAct (EBI)P14151
FunCoupENSG00000188404
BioGRIDSELL
STRING (EMBL)SELL
ZODIACSELL
Ontologies - Pathways
QuickGOP14151
Ontology : AmiGOprotease binding  protein binding  plasma membrane  integral component of plasma membrane  cell adhesion  heparin binding  external side of plasma membrane  carbohydrate binding  response to ATP  glycosphingolipid binding  regulation of immune response  cell adhesion molecule binding  leukocyte migration  
Ontology : EGO-EBIprotease binding  protein binding  plasma membrane  integral component of plasma membrane  cell adhesion  heparin binding  external side of plasma membrane  carbohydrate binding  response to ATP  glycosphingolipid binding  regulation of immune response  cell adhesion molecule binding  leukocyte migration  
Pathways : BIOCARTAAdhesion and Diapedesis of Lymphocytes [Genes]    Adhesion Molecules on Lymphocyte [Genes]    Monocyte and its Surface Molecules [Genes]    Neutrophil and Its Surface Molecules [Genes]    Adhesion and Diapedesis of Granulocytes [Genes]   
Pathways : KEGGCell adhesion molecules (CAMs)   
NDEx NetworkSELL
Atlas of Cancer Signalling NetworkSELL
Wikipedia pathwaysSELL
Orthology - Evolution
OrthoDB6402
GeneTree (enSembl)ENSG00000188404
Phylogenetic Trees/Animal Genes : TreeFamSELL
HOVERGENP14151
HOGENOMP14151
Homologs : HomoloGeneSELL
Homology/Alignments : Family Browser (UCSC)SELL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELL
dbVarSELL
ClinVarSELL
1000_GenomesSELL 
Exome Variant ServerSELL
ExAC (Exome Aggregation Consortium)SELL (select the gene name)
Genetic variants : HAPMAP6402
Genomic Variants (DGV)SELL [DGVbeta]
DECIPHER (Syndromes)1:169659806-169680843  ENSG00000188404
CONAN: Copy Number AnalysisSELL 
Mutations
ICGC Data PortalSELL 
TCGA Data PortalSELL 
Broad Tumor PortalSELL
OASIS PortalSELL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSELL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSELL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SELL
DgiDB (Drug Gene Interaction Database)SELL
DoCM (Curated mutations)SELL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELL (select a term)
intoGenSELL
Cancer3DSELL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM153240   
Orphanet
MedgenSELL
Genetic Testing Registry SELL
NextProtP14151 [Medical]
TSGene6402
GENETestsSELL
Huge Navigator SELL [HugePedia]
snp3D : Map Gene to Disease6402
BioCentury BCIQSELL
ClinGenSELL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6402
Chemical/Pharm GKB GenePA35642
Clinical trialSELL
Miscellaneous
canSAR (ICR)SELL (select the gene name)
Probes
Litterature
PubMed192 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELL
EVEXSELL
GoPubMedSELL
iHOPSELL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:50:54 CET 2016

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