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SELM (selenoprotein M)

Identity

Other aliasSEPM
HGNC (Hugo) -
LocusID (NCBI) 140606
Atlas_Id 73102
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 31500763 and ends at 31503551 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)SELM  140606  selenoprotein M
AliasesSEPM
GeneCards (Weizmann)SELM
Ensembl hg19 (Hinxton)ENSG00000198832 [Gene_View]  chr22:31500763-31503551 [Contig_View]  SELM [Vega]
Ensembl hg38 (Hinxton)ENSG00000198832 [Gene_View]  chr22:31500763-31503551 [Contig_View]  SELM [Vega]
ICGC DataPortalENSG00000198832
TCGA cBioPortalSELM
AceView (NCBI)SELM
Genatlas (Paris)SELM
WikiGenes140606
SOURCE (Princeton)SELM
Genetics Home Reference (NIH)SELM
Genomic and cartography
GoldenPath hg19 (UCSC)SELM  -     chr22:31500763-31503551 -  22q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SELM  -     22q12.2   [Description]    (hg38-Dec_2013)
EnsemblSELM - 22q12.2 [CytoView hg19]  SELM - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBISELM [Mapview hg19]  SELM [Mapview hg38]
OMIM610918   
Gene and transcription
Genbank (Entrez)AY043487 BC013421 BC030236 BC042299 BC053846
RefSeq transcript (Entrez)NM_080430
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)SELM
Cluster EST : UnigeneHs.55940 [ NCBI ]
CGAP (NCI)Hs.55940
Alternative Splicing GalleryENSG00000198832
Gene ExpressionSELM [ NCBI-GEO ]   SELM [ EBI - ARRAY_EXPRESS ]   SELM [ SEEK ]   SELM [ MEM ]
Gene Expression Viewer (FireBrowse)SELM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140606
GTEX Portal (Tissue expression)SELM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWX9
Splice isoforms : SwissVarQ8WWX9
PhosPhoSitePlusQ8WWX9
Domains : Interpro (EBI)Sep15_SelM    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Sep15_SelM (PF08806)   
Domain families : Pfam (NCBI)pfam08806   
Conserved Domain (NCBI)SELM
DMDM Disease mutations140606
Blocks (Seattle)SELM
SuperfamilyQ8WWX9
Human Protein AtlasENSG00000198832
Peptide AtlasQ8WWX9
HPRD15320
IPIIPI00103471   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWX9
IntAct (EBI)Q8WWX9
FunCoupENSG00000198832
BioGRIDSELM
STRING (EMBL)SELM
ZODIACSELM
Ontologies - Pathways
QuickGOQ8WWX9
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  endoplasmic reticulum  Golgi apparatus  perinuclear region of cytoplasm  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  endoplasmic reticulum  Golgi apparatus  perinuclear region of cytoplasm  
NDEx NetworkSELM
Atlas of Cancer Signalling NetworkSELM
Wikipedia pathwaysSELM
Orthology - Evolution
OrthoDB140606
GeneTree (enSembl)ENSG00000198832
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ8WWX9
HOGENOMQ8WWX9
Homologs : HomoloGeneSELM
Homology/Alignments : Family Browser (UCSC)SELM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELM
dbVarSELM
ClinVarSELM
1000_GenomesSELM 
Exome Variant ServerSELM
ExAC (Exome Aggregation Consortium)SELM (select the gene name)
Genetic variants : HAPMAP140606
Genomic Variants (DGV)SELM [DGVbeta]
DECIPHER (Syndromes)22:31500763-31503551  ENSG00000198832
CONAN: Copy Number AnalysisSELM 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSELM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMD-
BioMutasearch SELM
DgiDB (Drug Gene Interaction Database)SELM
DoCM (Curated mutations)SELM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELM (select a term)
intoGenSELM
Cancer3DSELM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610918   
Orphanet
MedgenSELM
Genetic Testing Registry SELM
NextProtQ8WWX9 [Medical]
TSGene140606
GENETestsSELM
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease140606
BioCentury BCIQSELM
ClinGenSELM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140606
Clinical trialSELM
Miscellaneous
canSAR (ICR)SELM (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELM
EVEXSELM
GoPubMedSELM
iHOPSELM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:45 CET 2017

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