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SELO (selenoprotein O)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 83642
Atlas_Id 73103
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 50639408 and ends at 50656045 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)SELO  83642  selenoprotein O
Aliases
GeneCards (Weizmann)SELO
Ensembl hg19 (Hinxton)ENSG00000073169 [Gene_View]  chr22:50639408-50656045 [Contig_View]  SELO [Vega]
Ensembl hg38 (Hinxton)ENSG00000073169 [Gene_View]  chr22:50639408-50656045 [Contig_View]  SELO [Vega]
ICGC DataPortalENSG00000073169
TCGA cBioPortalSELO
AceView (NCBI)SELO
Genatlas (Paris)SELO
WikiGenes83642
SOURCE (Princeton)SELO
Genetics Home Reference (NIH)SELO
Genomic and cartography
GoldenPath hg19 (UCSC)SELO  -     chr22:50639408-50656045 +  22q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SELO  -     22q13.33   [Description]    (hg38-Dec_2013)
EnsemblSELO - 22q13.33 [CytoView hg19]  SELO - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBISELO [Mapview hg19]  SELO [Mapview hg38]
OMIM607917   
Gene and transcription
Genbank (Entrez)AF274946 AY324823 BC001099 BC020510 BC032384
RefSeq transcript (Entrez)NM_031454
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011526 NW_004929431
Consensus coding sequences : CCDS (NCBI)SELO
Cluster EST : UnigeneHs.365405 [ NCBI ]
CGAP (NCI)Hs.365405
Alternative Splicing GalleryENSG00000073169
Gene ExpressionSELO [ NCBI-GEO ]   SELO [ EBI - ARRAY_EXPRESS ]   SELO [ SEEK ]   SELO [ MEM ]
Gene Expression Viewer (FireBrowse)SELO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83642
GTEX Portal (Tissue expression)SELO
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVL4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVL4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVL4
Splice isoforms : SwissVarQ9BVL4
PhosPhoSitePlusQ9BVL4
Domains : Interpro (EBI)UPF0061   
Domain families : Pfam (Sanger)UPF0061 (PF02696)   
Domain families : Pfam (NCBI)pfam02696   
Conserved Domain (NCBI)SELO
DMDM Disease mutations83642
Blocks (Seattle)SELO
SuperfamilyQ9BVL4
Human Protein AtlasENSG00000073169
Peptide AtlasQ9BVL4
HPRD07449
IPIIPI00031666   IPI00382473   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVL4
IntAct (EBI)Q9BVL4
FunCoupENSG00000073169
BioGRIDSELO
STRING (EMBL)SELO
ZODIACSELO
Ontologies - Pathways
QuickGOQ9BVL4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSELO
Atlas of Cancer Signalling NetworkSELO
Wikipedia pathwaysSELO
Orthology - Evolution
OrthoDB83642
GeneTree (enSembl)ENSG00000073169
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ9BVL4
HOGENOMQ9BVL4
Homologs : HomoloGeneSELO
Homology/Alignments : Family Browser (UCSC)SELO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELO
dbVarSELO
ClinVarSELO
1000_GenomesSELO 
Exome Variant ServerSELO
ExAC (Exome Aggregation Consortium)SELO (select the gene name)
Genetic variants : HAPMAP83642
Genomic Variants (DGV)SELO [DGVbeta]
DECIPHER (Syndromes)22:50639408-50656045  ENSG00000073169
CONAN: Copy Number AnalysisSELO 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch SELO
DgiDB (Drug Gene Interaction Database)SELO
DoCM (Curated mutations)SELO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELO (select a term)
intoGenSELO
Cancer3DSELO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607917   
Orphanet
MedgenSELO
Genetic Testing Registry SELO
NextProtQ9BVL4 [Medical]
TSGene83642
GENETestsSELO
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease83642
BioCentury BCIQSELO
ClinGenSELO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83642
Clinical trialSELO
Miscellaneous
canSAR (ICR)SELO (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELO
EVEXSELO
GoPubMedSELO
iHOPSELO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:46 CET 2017

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