Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SELPLG (selectin P ligand)

Identity

Alias_symbol (synonym)PSGL-1
CD162
Other aliasCLA
PSGL1
HGNC (Hugo) SELPLG
LocusID (NCBI) 6404
Atlas_Id 42251
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 109015680 and ends at 109025854 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SELPLG (12q24.11) / SELPLG (12q24.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SELPLG   10722
Cards
Entrez_Gene (NCBI)SELPLG  6404  selectin P ligand
AliasesCD162; CLA; PSGL-1; PSGL1
GeneCards (Weizmann)SELPLG
Ensembl hg19 (Hinxton)ENSG00000110876 [Gene_View]  chr12:109015680-109025854 [Contig_View]  SELPLG [Vega]
Ensembl hg38 (Hinxton)ENSG00000110876 [Gene_View]  chr12:109015680-109025854 [Contig_View]  SELPLG [Vega]
ICGC DataPortalENSG00000110876
TCGA cBioPortalSELPLG
AceView (NCBI)SELPLG
Genatlas (Paris)SELPLG
WikiGenes6404
SOURCE (Princeton)SELPLG
Genetics Home Reference (NIH)SELPLG
Genomic and cartography
GoldenPath hg19 (UCSC)SELPLG  -     chr12:109015680-109025854 -  12q24.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SELPLG  -     12q24.11   [Description]    (hg38-Dec_2013)
EnsemblSELPLG - 12q24.11 [CytoView hg19]  SELPLG - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBISELPLG [Mapview hg19]  SELPLG [Mapview hg38]
OMIM600738   
Gene and transcription
Genbank (Entrez)AK098315 AK127638 AK225644 AK290395 AK295238
RefSeq transcript (Entrez)NM_001206609 NM_003006
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)SELPLG
Cluster EST : UnigeneHs.591014 [ NCBI ]
CGAP (NCI)Hs.591014
Alternative Splicing GalleryENSG00000110876
Gene ExpressionSELPLG [ NCBI-GEO ]   SELPLG [ EBI - ARRAY_EXPRESS ]   SELPLG [ SEEK ]   SELPLG [ MEM ]
Gene Expression Viewer (FireBrowse)SELPLG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6404
GTEX Portal (Tissue expression)SELPLG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14242   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14242  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14242
Splice isoforms : SwissVarQ14242
PhosPhoSitePlusQ14242
Domains : Interpro (EBI)PSGL-1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SELPLG
DMDM Disease mutations6404
Blocks (Seattle)SELPLG
PDB (SRS)1G1S   
PDB (PDBSum)1G1S   
PDB (IMB)1G1S   
PDB (RSDB)1G1S   
Structural Biology KnowledgeBase1G1S   
SCOP (Structural Classification of Proteins)1G1S   
CATH (Classification of proteins structures)1G1S   
SuperfamilyQ14242
Human Protein AtlasENSG00000110876
Peptide AtlasQ14242
HPRD02845
IPIIPI00029591   IPI00909934   IPI01021433   IPI00444240   IPI01018057   
Protein Interaction databases
DIP (DOE-UCLA)Q14242
IntAct (EBI)Q14242
FunCoupENSG00000110876
BioGRIDSELPLG
STRING (EMBL)SELPLG
ZODIACSELPLG
Ontologies - Pathways
QuickGOQ14242
Ontology : AmiGOvirus receptor activity  uropod  receptor binding  protein binding  plasma membrane  plasma membrane  integral component of plasma membrane  cell adhesion  membrane  integral component of membrane  viral entry into host cell  leukocyte migration  leukocyte adhesive activation  cellular response to interleukin-6  
Ontology : EGO-EBIvirus receptor activity  uropod  receptor binding  protein binding  plasma membrane  plasma membrane  integral component of plasma membrane  cell adhesion  membrane  integral component of membrane  viral entry into host cell  leukocyte migration  leukocyte adhesive activation  cellular response to interleukin-6  
Pathways : BIOCARTACells and Molecules involved in local acute inflammatory response [Genes]    Adhesion and Diapedesis of Granulocytes [Genes]   
Pathways : KEGGCell adhesion molecules (CAMs)    Staphylococcus aureus infection   
NDEx NetworkSELPLG
Atlas of Cancer Signalling NetworkSELPLG
Wikipedia pathwaysSELPLG
Orthology - Evolution
OrthoDB6404
GeneTree (enSembl)ENSG00000110876
Phylogenetic Trees/Animal Genes : TreeFamSELPLG
HOVERGENQ14242
HOGENOMQ14242
Homologs : HomoloGeneSELPLG
Homology/Alignments : Family Browser (UCSC)SELPLG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELPLG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELPLG
dbVarSELPLG
ClinVarSELPLG
1000_GenomesSELPLG 
Exome Variant ServerSELPLG
ExAC (Exome Aggregation Consortium)SELPLG (select the gene name)
Genetic variants : HAPMAP6404
Genomic Variants (DGV)SELPLG [DGVbeta]
DECIPHER (Syndromes)12:109015680-109025854  ENSG00000110876
CONAN: Copy Number AnalysisSELPLG 
Mutations
ICGC Data PortalSELPLG 
TCGA Data PortalSELPLG 
Broad Tumor PortalSELPLG
OASIS PortalSELPLG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSELPLG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSELPLG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SELPLG
DgiDB (Drug Gene Interaction Database)SELPLG
DoCM (Curated mutations)SELPLG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELPLG (select a term)
intoGenSELPLG
Cancer3DSELPLG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600738   
Orphanet
MedgenSELPLG
Genetic Testing Registry SELPLG
NextProtQ14242 [Medical]
TSGene6404
GENETestsSELPLG
Huge Navigator SELPLG [HugePedia]
snp3D : Map Gene to Disease6404
BioCentury BCIQSELPLG
ClinGenSELPLG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6404
Chemical/Pharm GKB GenePA35644
Clinical trialSELPLG
Miscellaneous
canSAR (ICR)SELPLG (select the gene name)
Probes
Litterature
PubMed174 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELPLG
EVEXSELPLG
GoPubMedSELPLG
iHOPSELPLG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:18:43 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.