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SELT (selenoprotein T)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 51714
Atlas_Id 73104
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 150321066 and ends at 150348234 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)SELT  51714  selenoprotein T
Aliases
GeneCards (Weizmann)SELT
Ensembl hg19 (Hinxton)ENSG00000198843 [Gene_View]  chr3:150321066-150348234 [Contig_View]  SELT [Vega]
Ensembl hg38 (Hinxton)ENSG00000198843 [Gene_View]  chr3:150321066-150348234 [Contig_View]  SELT [Vega]
ICGC DataPortalENSG00000198843
TCGA cBioPortalSELT
AceView (NCBI)SELT
Genatlas (Paris)SELT
WikiGenes51714
SOURCE (Princeton)SELT
Genetics Home Reference (NIH)SELT
Genomic and cartography
GoldenPath hg19 (UCSC)SELT  -     chr3:150321066-150348234 +  3q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SELT  -     3q25.1   [Description]    (hg38-Dec_2013)
EnsemblSELT - 3q25.1 [CytoView hg19]  SELT - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBISELT [Mapview hg19]  SELT [Mapview hg38]
OMIM607912   
Gene and transcription
Genbank (Entrez)AF131856 AF195141 AK075006 AK300315 AY358095
RefSeq transcript (Entrez)NM_016275
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)SELT
Cluster EST : UnigeneHs.369052 [ NCBI ]
CGAP (NCI)Hs.369052
Alternative Splicing GalleryENSG00000198843
Gene ExpressionSELT [ NCBI-GEO ]   SELT [ EBI - ARRAY_EXPRESS ]   SELT [ SEEK ]   SELT [ MEM ]
Gene Expression Viewer (FireBrowse)SELT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51714
GTEX Portal (Tissue expression)SELT
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62341   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62341  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62341
Splice isoforms : SwissVarP62341
PhosPhoSitePlusP62341
Domains : Interpro (EBI)Selenoprotein_Rdx-typ    Selenoprotein_T    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Rdx (PF10262)   
Domain families : Pfam (NCBI)pfam10262   
Conserved Domain (NCBI)SELT
DMDM Disease mutations51714
Blocks (Seattle)SELT
SuperfamilyP62341
Human Protein AtlasENSG00000198843
Peptide AtlasP62341
HPRD07446
IPIIPI00008351   IPI00940122   IPI00947501   
Protein Interaction databases
DIP (DOE-UCLA)P62341
IntAct (EBI)P62341
FunCoupENSG00000198843
BioGRIDSELT
STRING (EMBL)SELT
ZODIACSELT
Ontologies - Pathways
QuickGOP62341
Ontology : AmiGOselenocysteine incorporation  cell  selenium binding  cell redox homeostasis  
Ontology : EGO-EBIselenocysteine incorporation  cell  selenium binding  cell redox homeostasis  
NDEx NetworkSELT
Atlas of Cancer Signalling NetworkSELT
Wikipedia pathwaysSELT
Orthology - Evolution
OrthoDB51714
GeneTree (enSembl)ENSG00000198843
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENP62341
HOGENOMP62341
Homologs : HomoloGeneSELT
Homology/Alignments : Family Browser (UCSC)SELT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELT
dbVarSELT
ClinVarSELT
1000_GenomesSELT 
Exome Variant ServerSELT
ExAC (Exome Aggregation Consortium)SELT (select the gene name)
Genetic variants : HAPMAP51714
Genomic Variants (DGV)SELT [DGVbeta]
DECIPHER (Syndromes)3:150321066-150348234  ENSG00000198843
CONAN: Copy Number AnalysisSELT 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch SELT
DgiDB (Drug Gene Interaction Database)SELT
DoCM (Curated mutations)SELT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELT (select a term)
intoGenSELT
Cancer3DSELT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607912   
Orphanet
MedgenSELT
Genetic Testing Registry SELT
NextProtP62341 [Medical]
TSGene51714
GENETestsSELT
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease51714
BioCentury BCIQSELT
ClinGenSELT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51714
Clinical trialSELT
Miscellaneous
canSAR (ICR)SELT (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELT
EVEXSELT
GoPubMedSELT
iHOPSELT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:46 CET 2017

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