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SELV (selenoprotein V)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 348303
Atlas_Id 73105
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 40005753 and ends at 40011326 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)SELV  348303  selenoprotein V
Aliases
GeneCards (Weizmann)SELV
Ensembl hg19 (Hinxton)ENSG00000186838 [Gene_View]  chr19:40005753-40011326 [Contig_View]  SELV [Vega]
Ensembl hg38 (Hinxton)ENSG00000186838 [Gene_View]  chr19:40005753-40011326 [Contig_View]  SELV [Vega]
ICGC DataPortalENSG00000186838
TCGA cBioPortalSELV
AceView (NCBI)SELV
Genatlas (Paris)SELV
WikiGenes348303
SOURCE (Princeton)SELV
Genetics Home Reference (NIH)SELV
Genomic and cartography
GoldenPath hg19 (UCSC)SELV  -     chr19:40005753-40011326 +  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SELV  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblSELV - 19q13.2 [CytoView hg19]  SELV - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBISELV [Mapview hg19]  SELV [Mapview hg38]
OMIM607919   
Gene and transcription
Genbank (Entrez)AY324825 BC117331
RefSeq transcript (Entrez)NM_182704
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)SELV
Cluster EST : UnigeneHs.319284 [ NCBI ]
CGAP (NCI)Hs.319284
Alternative Splicing GalleryENSG00000186838
Gene ExpressionSELV [ NCBI-GEO ]   SELV [ EBI - ARRAY_EXPRESS ]   SELV [ SEEK ]   SELV [ MEM ]
Gene Expression Viewer (FireBrowse)SELV [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348303
GTEX Portal (Tissue expression)SELV
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59797   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59797  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59797
Splice isoforms : SwissVarP59797
PhosPhoSitePlusP59797
Domains : Interpro (EBI)Selenoprotein_Rdx-typ    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Rdx (PF10262)   
Domain families : Pfam (NCBI)pfam10262   
Conserved Domain (NCBI)SELV
DMDM Disease mutations348303
Blocks (Seattle)SELV
SuperfamilyP59797
Human Protein AtlasENSG00000186838
Peptide AtlasP59797
HPRD12134
IPIIPI00719097   
Protein Interaction databases
DIP (DOE-UCLA)P59797
IntAct (EBI)P59797
FunCoupENSG00000186838
BioGRIDSELV
STRING (EMBL)SELV
ZODIACSELV
Ontologies - Pathways
QuickGOP59797
Ontology : AmiGOprotein binding  cell  selenium binding  cell redox homeostasis  
Ontology : EGO-EBIprotein binding  cell  selenium binding  cell redox homeostasis  
NDEx NetworkSELV
Atlas of Cancer Signalling NetworkSELV
Wikipedia pathwaysSELV
Orthology - Evolution
OrthoDB348303
GeneTree (enSembl)ENSG00000186838
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENP59797
HOGENOMP59797
Homologs : HomoloGeneSELV
Homology/Alignments : Family Browser (UCSC)SELV
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSELV [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SELV
dbVarSELV
ClinVarSELV
1000_GenomesSELV 
Exome Variant ServerSELV
ExAC (Exome Aggregation Consortium)SELV (select the gene name)
Genetic variants : HAPMAP348303
Genomic Variants (DGV)SELV [DGVbeta]
DECIPHER (Syndromes)19:40005753-40011326  ENSG00000186838
CONAN: Copy Number AnalysisSELV 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSELV  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMD-
BioMutasearch SELV
DgiDB (Drug Gene Interaction Database)SELV
DoCM (Curated mutations)SELV (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SELV (select a term)
intoGenSELV
Cancer3DSELV(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607919   
Orphanet
MedgenSELV
Genetic Testing Registry SELV
NextProtP59797 [Medical]
TSGene348303
GENETestsSELV
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease348303
BioCentury BCIQSELV
ClinGenSELV
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348303
Clinical trialSELV
Miscellaneous
canSAR (ICR)SELV (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSELV
EVEXSELV
GoPubMedSELV
iHOPSELV
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:46 CET 2017

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