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SEM1 (SEM1, 26S proteasome complex subunit)

Identity

Other aliasDSS1
ECD
SHFD1
SHFM1
SHSF1
Shfdg1
HGNC (Hugo) SEM1
LocusID (NCBI) 7979
Atlas_Id 56678
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 96318079 and ends at 96339203 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SEM1   10845
Cards
Entrez_Gene (NCBI)SEM1  7979  SEM1, 26S proteasome complex subunit
AliasesDSS1; ECD; SHFD1; SHFM1; 
SHSF1; Shfdg1
GeneCards (Weizmann)SEM1
Ensembl hg19 (Hinxton) [Gene_View]  chr7:96318079-96339203 [Contig_View]  SEM1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:96318079-96339203 [Contig_View]  SEM1 [Vega]
TCGA cBioPortalSEM1
AceView (NCBI)SEM1
Genatlas (Paris)SEM1
WikiGenes7979
SOURCE (Princeton)SEM1
Genetics Home Reference (NIH)SEM1
Genomic and cartography
GoldenPath hg19 (UCSC)SEM1  -     chr7:96318079-96339203 -  7q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SEM1  -     7q21.3   [Description]    (hg38-Dec_2013)
EnsemblSEM1 - 7q21.3 [CytoView hg19]  SEM1 - 7q21.3 [CytoView hg38]
Mapping of homologs : NCBISEM1 [Mapview hg19]  SEM1 [Mapview hg38]
OMIM601285   
Gene and transcription
Genbank (Entrez)AK094899 AK291070 AK309241 BC032782 CR456887
RefSeq transcript (Entrez)NM_006304
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEM1
Cluster EST : UnigeneHs.489201 [ NCBI ]
CGAP (NCI)Hs.489201
Gene ExpressionSEM1 [ NCBI-GEO ]   SEM1 [ EBI - ARRAY_EXPRESS ]   SEM1 [ SEEK ]   SEM1 [ MEM ]
Gene Expression Viewer (FireBrowse)SEM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7979
GTEX Portal (Tissue expression)SEM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60896   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60896  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60896
Splice isoforms : SwissVarP60896
PhosPhoSitePlusP60896
Domains : Interpro (EBI)DSS1_SEM1   
Domain families : Pfam (Sanger)DSS1_SEM1 (PF05160)   
Domain families : Pfam (NCBI)pfam05160   
Domain families : Smart (EMBL)DSS1_SEM1 (SM01385)  
Conserved Domain (NCBI)SEM1
DMDM Disease mutations7979
Blocks (Seattle)SEM1
PDB (SRS)1IYJ    1MIU    1MJE    3T5X   
PDB (PDBSum)1IYJ    1MIU    1MJE    3T5X   
PDB (IMB)1IYJ    1MIU    1MJE    3T5X   
PDB (RSDB)1IYJ    1MIU    1MJE    3T5X   
Structural Biology KnowledgeBase1IYJ    1MIU    1MJE    3T5X   
SCOP (Structural Classification of Proteins)1IYJ    1MIU    1MJE    3T5X   
CATH (Classification of proteins structures)1IYJ    1MIU    1MJE    3T5X   
SuperfamilyP60896
Peptide AtlasP60896
IPIIPI00013266   IPI00927910   IPI00927699   IPI00927938   
Protein Interaction databases
DIP (DOE-UCLA)P60896
IntAct (EBI)P60896
BioGRIDSEM1
STRING (EMBL)SEM1
ZODIACSEM1
Ontologies - Pathways
QuickGOP60896
Ontology : AmiGOproteasome complex  double-strand break repair via homologous recombination  protein binding  mRNA export from nucleus  proteolysis  proteasome regulatory particle, lid subcomplex  integrator complex  proteasome assembly  
Ontology : EGO-EBIproteasome complex  double-strand break repair via homologous recombination  protein binding  mRNA export from nucleus  proteolysis  proteasome regulatory particle, lid subcomplex  integrator complex  proteasome assembly  
NDEx NetworkSEM1
Atlas of Cancer Signalling NetworkSEM1
Wikipedia pathwaysSEM1
Orthology - Evolution
OrthoDB7979
Phylogenetic Trees/Animal Genes : TreeFamSEM1
HOVERGENP60896
HOGENOMP60896
Homologs : HomoloGeneSEM1
Homology/Alignments : Family Browser (UCSC)SEM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEM1
dbVarSEM1
ClinVarSEM1
1000_GenomesSEM1 
Exome Variant ServerSEM1
ExAC (Exome Aggregation Consortium)SEM1 (select the gene name)
Genetic variants : HAPMAP7979
Genomic Variants (DGV)SEM1 [DGVbeta]
DECIPHER (Syndromes)7:96318079-96339203  
CONAN: Copy Number AnalysisSEM1 
Mutations
ICGC Data PortalSEM1 
TCGA Data PortalSEM1 
Broad Tumor PortalSEM1
OASIS PortalSEM1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSEM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEM1
DgiDB (Drug Gene Interaction Database)SEM1
DoCM (Curated mutations)SEM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEM1 (select a term)
intoGenSEM1
Cancer3DSEM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601285   
Orphanet
MedgenSEM1
Genetic Testing Registry SEM1
NextProtP60896 [Medical]
TSGene7979
GENETestsSEM1
Huge Navigator SEM1 [HugePedia]
snp3D : Map Gene to Disease7979
BioCentury BCIQSEM1
ClinGenSEM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7979
Chemical/Pharm GKB GenePA35749
Clinical trialSEM1
Miscellaneous
canSAR (ICR)SEM1 (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEM1
EVEXSEM1
GoPubMedSEM1
iHOPSEM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:26:37 CET 2017

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