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SEMA3E (semaphorin 3E)

Identity

Alias_namesSEMAH
sema domain
Alias_symbol (synonym)M-SemaK
KIAA0331
coll-5
Other aliasM-SEMAH
HGNC (Hugo) SEMA3E
LocusID (NCBI) 9723
Atlas_Id 46233
Location 7q21.11  [Link to chromosome band 7q21]
Location_base_pair Starts at 83363906 and ends at 83641431 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SEMA3E (7q21.11) / SEMA3E (7q21.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEMA3E   10727
Cards
Entrez_Gene (NCBI)SEMA3E  9723  semaphorin 3E
AliasesM-SEMAH; M-SemaK; SEMAH; coll-5
GeneCards (Weizmann)SEMA3E
Ensembl hg19 (Hinxton)ENSG00000170381 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170381 [Gene_View]  chr7:83363906-83641431 [Contig_View]  SEMA3E [Vega]
ICGC DataPortalENSG00000170381
TCGA cBioPortalSEMA3E
AceView (NCBI)SEMA3E
Genatlas (Paris)SEMA3E
WikiGenes9723
SOURCE (Princeton)SEMA3E
Genetics Home Reference (NIH)SEMA3E
Genomic and cartography
GoldenPath hg38 (UCSC)SEMA3E  -     chr7:83363906-83641431 -  7q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEMA3E  -     7q21.11   [Description]    (hg19-Feb_2009)
EnsemblSEMA3E - 7q21.11 [CytoView hg19]  SEMA3E - 7q21.11 [CytoView hg38]
Mapping of homologs : NCBISEMA3E [Mapview hg19]  SEMA3E [Mapview hg38]
OMIM146110   214800   608166   
Gene and transcription
Genbank (Entrez)AB002329 AK297209 AK303925 BC140706 BC144338
RefSeq transcript (Entrez)NM_001178129 NM_012431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEMA3E
Cluster EST : UnigeneHs.528721 [ NCBI ]
CGAP (NCI)Hs.528721
Alternative Splicing GalleryENSG00000170381
Gene ExpressionSEMA3E [ NCBI-GEO ]   SEMA3E [ EBI - ARRAY_EXPRESS ]   SEMA3E [ SEEK ]   SEMA3E [ MEM ]
Gene Expression Viewer (FireBrowse)SEMA3E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9723
GTEX Portal (Tissue expression)SEMA3E
Human Protein AtlasENSG00000170381-SEMA3E [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15041   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15041  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15041
Splice isoforms : SwissVarO15041
PhosPhoSitePlusO15041
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    SEMA (PS51004)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Immunoglobulin    PSI    Semap_dom    Semaphorin    Semaphorin_3E    WD40/YVTN_repeat-like_dom   
Domain families : Pfam (Sanger)ig (PF00047)    Sema (PF01403)   
Domain families : Pfam (NCBI)pfam00047    pfam01403   
Domain families : Smart (EMBL)PSI (SM00423)  Sema (SM00630)  
Conserved Domain (NCBI)SEMA3E
DMDM Disease mutations9723
Blocks (Seattle)SEMA3E
SuperfamilyO15041
Human Protein Atlas [tissue]ENSG00000170381-SEMA3E [tissue]
Peptide AtlasO15041
HPRD11545
IPIIPI00004494   IPI00927930   IPI00926617   IPI00927263   
Protein Interaction databases
DIP (DOE-UCLA)O15041
IntAct (EBI)O15041
FunCoupENSG00000170381
BioGRIDSEMA3E
STRING (EMBL)SEMA3E
ZODIACSEMA3E
Ontologies - Pathways
QuickGOO15041
Ontology : AmiGObranching involved in blood vessel morphogenesis  negative regulation of cell-matrix adhesion  sprouting angiogenesis  protein binding  extracellular region  extracellular space  nervous system development  regulation of cell shape  negative regulation of angiogenesis  cell differentiation  semaphorin receptor binding  synapse organization  semaphorin-plexin signaling pathway  regulation of actin cytoskeleton reorganization  
Ontology : EGO-EBIbranching involved in blood vessel morphogenesis  negative regulation of cell-matrix adhesion  sprouting angiogenesis  protein binding  extracellular region  extracellular space  nervous system development  regulation of cell shape  negative regulation of angiogenesis  cell differentiation  semaphorin receptor binding  synapse organization  semaphorin-plexin signaling pathway  regulation of actin cytoskeleton reorganization  
Pathways : KEGGAxon guidance   
NDEx NetworkSEMA3E
Atlas of Cancer Signalling NetworkSEMA3E
Wikipedia pathwaysSEMA3E
Orthology - Evolution
OrthoDB9723
GeneTree (enSembl)ENSG00000170381
Phylogenetic Trees/Animal Genes : TreeFamSEMA3E
HOVERGENO15041
HOGENOMO15041
Homologs : HomoloGeneSEMA3E
Homology/Alignments : Family Browser (UCSC)SEMA3E
Gene fusions - Rearrangements
Fusion: Tumor Portal SEMA3E
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEMA3E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEMA3E
dbVarSEMA3E
ClinVarSEMA3E
1000_GenomesSEMA3E 
Exome Variant ServerSEMA3E
ExAC (Exome Aggregation Consortium)ENSG00000170381
GNOMAD BrowserENSG00000170381
Genetic variants : HAPMAP9723
Genomic Variants (DGV)SEMA3E [DGVbeta]
DECIPHERSEMA3E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEMA3E 
Mutations
ICGC Data PortalSEMA3E 
TCGA Data PortalSEMA3E 
Broad Tumor PortalSEMA3E
OASIS PortalSEMA3E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEMA3E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEMA3E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEMA3E
DgiDB (Drug Gene Interaction Database)SEMA3E
DoCM (Curated mutations)SEMA3E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEMA3E (select a term)
intoGenSEMA3E
Cancer3DSEMA3E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM146110    214800    608166   
Orphanet110   
MedgenSEMA3E
Genetic Testing Registry SEMA3E
NextProtO15041 [Medical]
TSGene9723
GENETestsSEMA3E
Target ValidationSEMA3E
Huge Navigator SEMA3E [HugePedia]
snp3D : Map Gene to Disease9723
BioCentury BCIQSEMA3E
ClinGenSEMA3E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9723
Chemical/Pharm GKB GenePA35649
Clinical trialSEMA3E
Miscellaneous
canSAR (ICR)SEMA3E (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEMA3E
EVEXSEMA3E
GoPubMedSEMA3E
iHOPSEMA3E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:10:12 CET 2017

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