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SEMA3G (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G)

Identity

Other namessem2
HGNC (Hugo) SEMA3G
LocusID (NCBI) 56920
Location 3p21.1
Location_base_pair Starts at 52467268 and ends at 52479043 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SEMA3G   30400
Entrez_Gene (NCBI)SEMA3G  56920  sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G
Cards
GeneCards (Weizmann)SEMA3G
Ensembl (Hinxton)ENSG00000010319 [Gene_View]  chr3:52467268-52479043 [Contig_View]  SEMA3G [Vega]
AceView (NCBI)SEMA3G
Genatlas (Paris)SEMA3G
SOURCE (Stanford)NM_020163
Genomic and cartography
GoldenPath (UCSC)SEMA3G  -  3p21.1   chr3:52467268-52479043 -  3p21.1   [Description]    (hg19-Feb_2009)
EnsemblSEMA3G - 3p21.1 [CytoView]
Mapping of homologs : NCBISEMA3G [Mapview]
Gene and transcription
Genbank (Entrez)AB029496 AK024425 BC098104 BC098137 BC099724
RefSeq transcript (SRS)NM_020163
RefSeq transcript (Entrez)NM_020163
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
Consensus coding sequences : CCDS (NCBI)SEMA3G
Cluster EST : UnigeneHs.59729 [ SRS ] Hs.59729 [ NCBI ]
CGAP (NCI)Hs.59729
Alternative Splicing : Fast-db (Paris)GSHG0021762
Alternative Splicing GalleryENSG00000010319
Gene ExpressionSEMA3G [ NCBI-GEO ]   SEMA3G [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS98 (SRS) Q9NS98 (Uniprot)
NextProtQ9NS98
With graphics : InterProQ9NS98
Splice isoforms : SwissVarQ9NS98(Swissvar)
Domaine pattern : Prosite (SRS)IG_LIKE (PS50835)    SEMA (PS51004)   
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    SEMA (PS51004)   
Domains : Interpro (SRS)Ig-like    Ig-like_fold    Ig_sub    Plexin-like    Plexin-like_fold    Plexin_repeat    Semaphorin/CD100_Ag    WD40/YVTN_repeat-like_dom   
Domains : Interpro (EBI)Ig-like    Ig-like_fold    Ig_sub    Plexin-like    Plexin-like_fold    Plexin_repeat    Semaphorin/CD100_Ag    WD40/YVTN_repeat-like_dom   
Related proteins : CluSTrQ9NS98
Domain families : Pfam (SRS)PSI (PF01437)    Sema (PF01403)   
Domain families : Pfam (Sanger)PSI (PF01437)    Sema (PF01403)   
Domain families : Pfam (NCBI)pfam01437    pfam01403   
Domain families : Smart (EMBL)IG (SM00409)  PSI (SM00423)  Sema (SM00630)  
DMDM56920
Blocks (Seattle)Q9NS98
Human Protein AtlasENSG00000010319
HPRD14251
IPIIPI00024570   IPI00945615   IPI00945962   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS98
IntAct (EBI)Q9NS98
FunCoupENSG00000010319
REACTOMESEMA3G
Protein Interaction Database56920
BioGRIDSEMA3G
InParanoidQ9NS98
Interologous Interaction database Q9NS98
IntegromeDBSEMA3G
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SEMA3G
SNP (GeneSNP Utah)SEMA3G
SNP : HGBaseSEMA3G
Genetic variants : HAPMAPSEMA3G
Somatic Mutations in Cancer : COSMICSEMA3G 
CONAN: Copy Number AnalysisSEMA3G 
Mutations and Diseases : HGMDSEMA3G
OMIM
GENETests
Disease Genetic AssociationSEMA3G
Huge Navigator SEMA3G [HugePedia]  SEMA3G [HugeCancerGEM]
Genomic VariantsSEMA3G  SEMA3G [DGVbeta]
snp3D : Map Gene to Disease56920
General knowledge
Homologs : HomoloGeneSEMA3G
Homology/Alignments : Family Browser (UCSC)SEMA3G
Phylogenetic Trees/Animal Genes : TreeFamSEMA3G
Chemical/Protein Interactions : CTD56920
Chemical/Pharm GKB GenePA142670937
Clinical trialSEMA3G
Cancer Resource (Charite)ENSG00000010319
Ontology : AmiGOreceptor activity  extracellular region  multicellular organismal development  membrane  
Ontology : EGO-EBIreceptor activity  extracellular region  multicellular organismal development  membrane  
Pathways : KEGGAxon guidance
Other databases
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
PubGeneSEMA3G
iHOPSEMA3G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:27:29 CEST 2013
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