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SEMA3G (semaphorin 3G)

Identity

Alias_namessema domain
Alias_symbol (synonym)FLJ00014
sem2
Other alias
HGNC (Hugo) SEMA3G
LocusID (NCBI) 56920
Atlas_Id 50483
Location 3p21.1  [Link to chromosome band 3p21]
Location_base_pair Starts at 52433035 and ends at 52445085 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SEMA3G (3p21.1) / SEMA3G (3p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEMA3G   30400
Cards
Entrez_Gene (NCBI)SEMA3G  56920  semaphorin 3G
Aliasessem2
GeneCards (Weizmann)SEMA3G
Ensembl hg19 (Hinxton)ENSG00000010319 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000010319 [Gene_View]  chr3:52433035-52445085 [Contig_View]  SEMA3G [Vega]
ICGC DataPortalENSG00000010319
TCGA cBioPortalSEMA3G
AceView (NCBI)SEMA3G
Genatlas (Paris)SEMA3G
WikiGenes56920
SOURCE (Princeton)SEMA3G
Genetics Home Reference (NIH)SEMA3G
Genomic and cartography
GoldenPath hg38 (UCSC)SEMA3G  -     chr3:52433035-52445085 -  3p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEMA3G  -     3p21.1   [Description]    (hg19-Feb_2009)
EnsemblSEMA3G - 3p21.1 [CytoView hg19]  SEMA3G - 3p21.1 [CytoView hg38]
Mapping of homologs : NCBISEMA3G [Mapview hg19]  SEMA3G [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB029496 AK024425 BC098104 BC098137 BC099724
RefSeq transcript (Entrez)NM_020163
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEMA3G
Cluster EST : UnigeneHs.59729 [ NCBI ]
CGAP (NCI)Hs.59729
Alternative Splicing GalleryENSG00000010319
Gene ExpressionSEMA3G [ NCBI-GEO ]   SEMA3G [ EBI - ARRAY_EXPRESS ]   SEMA3G [ SEEK ]   SEMA3G [ MEM ]
Gene Expression Viewer (FireBrowse)SEMA3G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56920
GTEX Portal (Tissue expression)SEMA3G
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS98
Splice isoforms : SwissVarQ9NS98
PhosPhoSitePlusQ9NS98
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    SEMA (PS51004)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Immunoglobulin    PSI    Semap_dom    Semaphorin    WD40/YVTN_repeat-like_dom   
Domain families : Pfam (Sanger)ig (PF00047)    Sema (PF01403)   
Domain families : Pfam (NCBI)pfam00047    pfam01403   
Domain families : Smart (EMBL)PSI (SM00423)  Sema (SM00630)  
Conserved Domain (NCBI)SEMA3G
DMDM Disease mutations56920
Blocks (Seattle)SEMA3G
SuperfamilyQ9NS98
Human Protein AtlasENSG00000010319
Peptide AtlasQ9NS98
HPRD14251
IPIIPI00024570   IPI00945615   IPI00945962   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS98
IntAct (EBI)Q9NS98
FunCoupENSG00000010319
BioGRIDSEMA3G
STRING (EMBL)SEMA3G
ZODIACSEMA3G
Ontologies - Pathways
QuickGOQ9NS98
Ontology : AmiGOreceptor binding  negative regulation of axon extension  extracellular exosome  
Ontology : EGO-EBIreceptor binding  negative regulation of axon extension  extracellular exosome  
Pathways : KEGGAxon guidance   
NDEx NetworkSEMA3G
Atlas of Cancer Signalling NetworkSEMA3G
Wikipedia pathwaysSEMA3G
Orthology - Evolution
OrthoDB56920
GeneTree (enSembl)ENSG00000010319
Phylogenetic Trees/Animal Genes : TreeFamSEMA3G
HOVERGENQ9NS98
HOGENOMQ9NS98
Homologs : HomoloGeneSEMA3G
Homology/Alignments : Family Browser (UCSC)SEMA3G
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEMA3G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEMA3G
dbVarSEMA3G
ClinVarSEMA3G
1000_GenomesSEMA3G 
Exome Variant ServerSEMA3G
ExAC (Exome Aggregation Consortium)SEMA3G (select the gene name)
Genetic variants : HAPMAP56920
Genomic Variants (DGV)SEMA3G [DGVbeta]
DECIPHERSEMA3G [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEMA3G 
Mutations
ICGC Data PortalSEMA3G 
TCGA Data PortalSEMA3G 
Broad Tumor PortalSEMA3G
OASIS PortalSEMA3G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEMA3G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEMA3G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEMA3G
DgiDB (Drug Gene Interaction Database)SEMA3G
DoCM (Curated mutations)SEMA3G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEMA3G (select a term)
intoGenSEMA3G
Cancer3DSEMA3G(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSEMA3G
Genetic Testing Registry SEMA3G
NextProtQ9NS98 [Medical]
TSGene56920
GENETestsSEMA3G
Target ValidationSEMA3G
Huge Navigator SEMA3G [HugePedia]
snp3D : Map Gene to Disease56920
BioCentury BCIQSEMA3G
ClinGenSEMA3G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56920
Chemical/Pharm GKB GenePA142670937
Clinical trialSEMA3G
Miscellaneous
canSAR (ICR)SEMA3G (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEMA3G
EVEXSEMA3G
GoPubMedSEMA3G
iHOPSEMA3G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:06:52 CEST 2017

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