Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SEMA4F (ssemaphorin 4F)

Identity

Alias_namesSEMAM
sema domain
Alias_symbol (synonym)SEMAW
Other aliasM-SEMA
PRO2353
S4F
m-Sema-M
HGNC (Hugo) SEMA4F
LocusID (NCBI) 10505
Atlas_Id 42256
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 74881355 and ends at 74910981 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDK6 (7q21.2) / SEMA4F (2p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEMA4F   10734
Cards
Entrez_Gene (NCBI)SEMA4F  10505  ssemaphorin 4F
AliasesM-SEMA; PRO2353; S4F; SEMAM; 
SEMAW; m-Sema-M
GeneCards (Weizmann)SEMA4F
Ensembl hg19 (Hinxton)ENSG00000135622 [Gene_View]  chr2:74881355-74910981 [Contig_View]  SEMA4F [Vega]
Ensembl hg38 (Hinxton)ENSG00000135622 [Gene_View]  chr2:74881355-74910981 [Contig_View]  SEMA4F [Vega]
ICGC DataPortalENSG00000135622
TCGA cBioPortalSEMA4F
AceView (NCBI)SEMA4F
Genatlas (Paris)SEMA4F
WikiGenes10505
SOURCE (Princeton)SEMA4F
Genetics Home Reference (NIH)SEMA4F
Genomic and cartography
GoldenPath hg19 (UCSC)SEMA4F  -     chr2:74881355-74910981 +  2p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SEMA4F  -     2p13.1   [Description]    (hg38-Dec_2013)
EnsemblSEMA4F - 2p13.1 [CytoView hg19]  SEMA4F - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBISEMA4F [Mapview hg19]  SEMA4F [Mapview hg38]
OMIM603706   
Gene and transcription
Genbank (Entrez)AB021292 AB022317 AF053369 AK075384 AK095587
RefSeq transcript (Entrez)NM_001271661 NM_001271662 NM_004263
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)SEMA4F
Cluster EST : UnigeneHs.25887 [ NCBI ]
CGAP (NCI)Hs.25887
Alternative Splicing GalleryENSG00000135622
Gene ExpressionSEMA4F [ NCBI-GEO ]   SEMA4F [ EBI - ARRAY_EXPRESS ]   SEMA4F [ SEEK ]   SEMA4F [ MEM ]
Gene Expression Viewer (FireBrowse)SEMA4F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10505
GTEX Portal (Tissue expression)SEMA4F
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95754   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95754  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95754
Splice isoforms : SwissVarO95754
PhosPhoSitePlusO95754
Domaine pattern : Prosite (Expaxy)SEMA (PS51004)   
Domains : Interpro (EBI)Plexin-like_fold    Plexin_repeat    Seamphorin_4F    Semap_dom    Semaphorin    WD40/YVTN_repeat-like_dom   
Domain families : Pfam (Sanger)PSI (PF01437)    Sema (PF01403)   
Domain families : Pfam (NCBI)pfam01437    pfam01403   
Domain families : Smart (EMBL)PSI (SM00423)  Sema (SM00630)  
Conserved Domain (NCBI)SEMA4F
DMDM Disease mutations10505
Blocks (Seattle)SEMA4F
SuperfamilyO95754
Human Protein AtlasENSG00000135622
Peptide AtlasO95754
HPRD04748
IPIIPI00032914   IPI00216574   IPI00022399   IPI00917447   IPI00916558   IPI00917657   IPI00917810   IPI00917896   IPI00916888   
Protein Interaction databases
DIP (DOE-UCLA)O95754
IntAct (EBI)O95754
FunCoupENSG00000135622
BioGRIDSEMA4F
STRING (EMBL)SEMA4F
ZODIACSEMA4F
Ontologies - Pathways
QuickGOO95754
Ontology : AmiGOneural crest cell migration  extracellular space  endoplasmic reticulum  plasma membrane  integral component of plasma membrane  cell-cell signaling  nervous system development  axon guidance  membrane  semaphorin receptor binding  positive regulation of cell migration  retinal ganglion cell axon guidance  neuropilin binding  postsynaptic membrane  chemorepellent activity  negative regulation of axon extension involved in axon guidance  negative chemotaxis  semaphorin-plexin signaling pathway  
Ontology : EGO-EBIneural crest cell migration  extracellular space  endoplasmic reticulum  plasma membrane  integral component of plasma membrane  cell-cell signaling  nervous system development  axon guidance  membrane  semaphorin receptor binding  positive regulation of cell migration  retinal ganglion cell axon guidance  neuropilin binding  postsynaptic membrane  chemorepellent activity  negative regulation of axon extension involved in axon guidance  negative chemotaxis  semaphorin-plexin signaling pathway  
Pathways : KEGGAxon guidance   
NDEx NetworkSEMA4F
Atlas of Cancer Signalling NetworkSEMA4F
Wikipedia pathwaysSEMA4F
Orthology - Evolution
OrthoDB10505
GeneTree (enSembl)ENSG00000135622
Phylogenetic Trees/Animal Genes : TreeFamSEMA4F
HOVERGENO95754
HOGENOMO95754
Homologs : HomoloGeneSEMA4F
Homology/Alignments : Family Browser (UCSC)SEMA4F
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEMA4F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEMA4F
dbVarSEMA4F
ClinVarSEMA4F
1000_GenomesSEMA4F 
Exome Variant ServerSEMA4F
ExAC (Exome Aggregation Consortium)SEMA4F (select the gene name)
Genetic variants : HAPMAP10505
Genomic Variants (DGV)SEMA4F [DGVbeta]
DECIPHER (Syndromes)2:74881355-74910981  ENSG00000135622
CONAN: Copy Number AnalysisSEMA4F 
Mutations
ICGC Data PortalSEMA4F 
TCGA Data PortalSEMA4F 
Broad Tumor PortalSEMA4F
OASIS PortalSEMA4F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEMA4F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEMA4F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEMA4F
DgiDB (Drug Gene Interaction Database)SEMA4F
DoCM (Curated mutations)SEMA4F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEMA4F (select a term)
intoGenSEMA4F
Cancer3DSEMA4F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603706   
Orphanet
MedgenSEMA4F
Genetic Testing Registry SEMA4F
NextProtO95754 [Medical]
TSGene10505
GENETestsSEMA4F
Huge Navigator SEMA4F [HugePedia]
snp3D : Map Gene to Disease10505
BioCentury BCIQSEMA4F
ClinGenSEMA4F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10505
Chemical/Pharm GKB GenePA35656
Clinical trialSEMA4F
Miscellaneous
canSAR (ICR)SEMA4F (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEMA4F
EVEXSEMA4F
GoPubMedSEMA4F
iHOPSEMA4F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:18:45 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.