Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SEMA4G (sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G)

Identity

Alias_namessema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
Alias_symbol (synonym)FLJ20590
KIAA1619
Other alias-
HGNC (Hugo) SEMA4G
LocusID (NCBI) 57715
Atlas_Id 73110
Location 10q24.31  [Link to chromosome band 10q24]
Location_base_pair Starts at 102732286 and ends at 102745373 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ABCC6 (16p13.11) / SEMA4G (10q24.31)CCDC73 (11p13) / SEMA4G (10q24.31)SEMA4G (10q24.31) / SEMA4G (10q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEMA4G   10735
Cards
Entrez_Gene (NCBI)SEMA4G  57715  sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
Aliases
GeneCards (Weizmann)SEMA4G
Ensembl hg19 (Hinxton)ENSG00000095539 [Gene_View]  chr10:102732286-102745373 [Contig_View]  SEMA4G [Vega]
Ensembl hg38 (Hinxton)ENSG00000095539 [Gene_View]  chr10:102732286-102745373 [Contig_View]  SEMA4G [Vega]
ICGC DataPortalENSG00000095539
TCGA cBioPortalSEMA4G
AceView (NCBI)SEMA4G
Genatlas (Paris)SEMA4G
WikiGenes57715
SOURCE (Princeton)SEMA4G
Genetics Home Reference (NIH)SEMA4G
Genomic and cartography
GoldenPath hg19 (UCSC)SEMA4G  -     chr10:102732286-102745373 +  10q24.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SEMA4G  -     10q24.31   [Description]    (hg38-Dec_2013)
EnsemblSEMA4G - 10q24.31 [CytoView hg19]  SEMA4G - 10q24.31 [CytoView hg38]
Mapping of homologs : NCBISEMA4G [Mapview hg19]  SEMA4G [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB046839 AK000597 AK297431 AW161452 BC020960
RefSeq transcript (Entrez)NM_001203244 NM_017893
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)SEMA4G
Cluster EST : UnigeneHs.735152 [ NCBI ]
CGAP (NCI)Hs.735152
Alternative Splicing GalleryENSG00000095539
Gene ExpressionSEMA4G [ NCBI-GEO ]   SEMA4G [ EBI - ARRAY_EXPRESS ]   SEMA4G [ SEEK ]   SEMA4G [ MEM ]
Gene Expression Viewer (FireBrowse)SEMA4G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57715
GTEX Portal (Tissue expression)SEMA4G
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTN9
Splice isoforms : SwissVarQ9NTN9
PhosPhoSitePlusQ9NTN9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    SEMA (PS51004)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Plexin-like_fold    Plexin_repeat    Semap_dom    Semaphorin    WD40/YVTN_repeat-like_dom   
Domain families : Pfam (Sanger)PSI (PF01437)    Sema (PF01403)   
Domain families : Pfam (NCBI)pfam01437    pfam01403   
Domain families : Smart (EMBL)IG (SM00409)  PSI (SM00423)  Sema (SM00630)  
Conserved Domain (NCBI)SEMA4G
DMDM Disease mutations57715
Blocks (Seattle)SEMA4G
SuperfamilyQ9NTN9
Human Protein AtlasENSG00000095539
Peptide AtlasQ9NTN9
HPRD10218
IPIIPI00018264   IPI00478294   IPI00908683   IPI00978679   IPI00016629   IPI00979530   
Protein Interaction databases
DIP (DOE-UCLA)Q9NTN9
IntAct (EBI)Q9NTN9
FunCoupENSG00000095539
BioGRIDSEMA4G
STRING (EMBL)SEMA4G
ZODIACSEMA4G
Ontologies - Pathways
QuickGOQ9NTN9
Ontology : AmiGOprotein binding  plasma membrane  nervous system development  integral component of membrane  cell differentiation  
Ontology : EGO-EBIprotein binding  plasma membrane  nervous system development  integral component of membrane  cell differentiation  
Pathways : KEGGAxon guidance   
NDEx NetworkSEMA4G
Atlas of Cancer Signalling NetworkSEMA4G
Wikipedia pathwaysSEMA4G
Orthology - Evolution
OrthoDB57715
GeneTree (enSembl)ENSG00000095539
Phylogenetic Trees/Animal Genes : TreeFamSEMA4G
HOVERGENQ9NTN9
HOGENOMQ9NTN9
Homologs : HomoloGeneSEMA4G
Homology/Alignments : Family Browser (UCSC)SEMA4G
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEMA4G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEMA4G
dbVarSEMA4G
ClinVarSEMA4G
1000_GenomesSEMA4G 
Exome Variant ServerSEMA4G
ExAC (Exome Aggregation Consortium)SEMA4G (select the gene name)
Genetic variants : HAPMAP57715
Genomic Variants (DGV)SEMA4G [DGVbeta]
DECIPHER (Syndromes)10:102732286-102745373  ENSG00000095539
CONAN: Copy Number AnalysisSEMA4G 
Mutations
ICGC Data PortalSEMA4G 
TCGA Data PortalSEMA4G 
Broad Tumor PortalSEMA4G
OASIS PortalSEMA4G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEMA4G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEMA4G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEMA4G
DgiDB (Drug Gene Interaction Database)SEMA4G
DoCM (Curated mutations)SEMA4G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEMA4G (select a term)
intoGenSEMA4G
Cancer3DSEMA4G(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSEMA4G
Genetic Testing Registry SEMA4G
NextProtQ9NTN9 [Medical]
TSGene57715
GENETestsSEMA4G
Huge Navigator SEMA4G [HugePedia]
snp3D : Map Gene to Disease57715
BioCentury BCIQSEMA4G
ClinGenSEMA4G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57715
Chemical/Pharm GKB GenePA35657
Clinical trialSEMA4G
Miscellaneous
canSAR (ICR)SEMA4G (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEMA4G
EVEXSEMA4G
GoPubMedSEMA4G
iHOPSEMA4G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:47 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.