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SEMA5A-AS1 (SEMA5A antisense RNA 1)

Identity

Other aliasCTD-2201E9.1
HGNC (Hugo) SEMA5A-AS1
LocusID (NCBI) 101929338
Atlas_Id 78944
Location 5p15.31  [Link to chromosome band 5p15]
Location_base_pair Starts at 9511333 and ends at 9518086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEMA5A-AS1   52973
Cards
Entrez_Gene (NCBI)SEMA5A-AS1  101929338  SEMA5A antisense RNA 1
AliasesCTD-2201E9.1
GeneCards (Weizmann)SEMA5A-AS1
Ensembl hg19 (Hinxton)ENSG00000251370 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251370 [Gene_View]  ENSG00000251370 [Sequence]  chr5:9511333-9518086 [Contig_View]  SEMA5A-AS1 [Vega]
ICGC DataPortalENSG00000251370
TCGA cBioPortalSEMA5A-AS1
AceView (NCBI)SEMA5A-AS1
Genatlas (Paris)SEMA5A-AS1
WikiGenes101929338
SOURCE (Princeton)SEMA5A-AS1
Genetics Home Reference (NIH)SEMA5A-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SEMA5A-AS1  -     chr5:9511333-9518086 +  5p15.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEMA5A-AS1  -     5p15.31   [Description]    (hg19-Feb_2009)
SEMA5A-AS1 - 5p15.31 [CytoView hg19]  SEMA5A-AS1 - 5p15.31 [CytoView hg38]
Mapping of homologs : NCBISEMA5A-AS1 [Mapview hg19]  SEMA5A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057486
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEMA5A-AS1
Cluster EST : UnigeneHs.675861 [ NCBI ]
CGAP (NCI)Hs.675861
Alternative Splicing GalleryENSG00000251370
Gene ExpressionSEMA5A-AS1 [ NCBI-GEO ]   SEMA5A-AS1 [ EBI - ARRAY_EXPRESS ]   SEMA5A-AS1 [ SEEK ]   SEMA5A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SEMA5A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929338
GTEX Portal (Tissue expression)SEMA5A-AS1
Human Protein AtlasENSG00000251370-SEMA5A-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SEMA5A-AS1
DMDM Disease mutations101929338
Blocks (Seattle)SEMA5A-AS1
Human Protein Atlas [tissue]ENSG00000251370-SEMA5A-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000251370
BioGRIDSEMA5A-AS1
STRING (EMBL)SEMA5A-AS1
ZODIACSEMA5A-AS1
Ontologies - Pathways
Huge Navigator SEMA5A-AS1 [HugePedia]
snp3D : Map Gene to Disease101929338
BioCentury BCIQSEMA5A-AS1
ClinGenSEMA5A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929338
Clinical trialSEMA5A-AS1
Miscellaneous
canSAR (ICR)SEMA5A-AS1 (select the gene name)
DataMed IndexSEMA5A-AS1
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEMA5A-AS1
EVEXSEMA5A-AS1
GoPubMedSEMA5A-AS1
iHOPSEMA5A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Apr 30 13:55:47 CEST 2019

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