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SEMA6B (semaphorin 6B)

Identity

Alias_namesSEMAN
sema domain
Alias_symbol (synonym)semaZ
SEMA-VIB
SEM-SEMA-Y
Other alias
HGNC (Hugo) SEMA6B
LocusID (NCBI) 10501
Atlas_Id 53563
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4542588 and ends at 4559759 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEMA6B   10739
Cards
Entrez_Gene (NCBI)SEMA6B  10501  semaphorin 6B
AliasesSEM-SEMA-Y; SEMA-VIB; SEMAN; semaZ
GeneCards (Weizmann)SEMA6B
Ensembl hg19 (Hinxton)ENSG00000167680 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167680 [Gene_View]  chr19:4542588-4559759 [Contig_View]  SEMA6B [Vega]
ICGC DataPortalENSG00000167680
TCGA cBioPortalSEMA6B
AceView (NCBI)SEMA6B
Genatlas (Paris)SEMA6B
WikiGenes10501
SOURCE (Princeton)SEMA6B
Genetics Home Reference (NIH)SEMA6B
Genomic and cartography
GoldenPath hg38 (UCSC)SEMA6B  -     chr19:4542588-4559759 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEMA6B  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblSEMA6B - 19p13.3 [CytoView hg19]  SEMA6B - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBISEMA6B [Mapview hg19]  SEMA6B [Mapview hg38]
OMIM608873   
Gene and transcription
Genbank (Entrez)AB022433 AB209278 AF216389 AF293363 AI825930
RefSeq transcript (Entrez)NM_020241 NM_032108 NM_133327
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEMA6B
Cluster EST : UnigeneHs.465642 [ NCBI ]
CGAP (NCI)Hs.465642
Alternative Splicing GalleryENSG00000167680
Gene ExpressionSEMA6B [ NCBI-GEO ]   SEMA6B [ EBI - ARRAY_EXPRESS ]   SEMA6B [ SEEK ]   SEMA6B [ MEM ]
Gene Expression Viewer (FireBrowse)SEMA6B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10501
GTEX Portal (Tissue expression)SEMA6B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3T3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3T3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3T3
Splice isoforms : SwissVarQ9H3T3
PhosPhoSitePlusQ9H3T3
Domaine pattern : Prosite (Expaxy)SEMA (PS51004)   
Domains : Interpro (EBI)Plexin_repeat    Semap_dom    Semaphorin    WD40/YVTN_repeat-like_dom   
Domain families : Pfam (Sanger)PSI (PF01437)    Sema (PF01403)   
Domain families : Pfam (NCBI)pfam01437    pfam01403   
Domain families : Smart (EMBL)Sema (SM00630)  
Conserved Domain (NCBI)SEMA6B
DMDM Disease mutations10501
Blocks (Seattle)SEMA6B
SuperfamilyQ9H3T3
Human Protein AtlasENSG00000167680
Peptide AtlasQ9H3T3
HPRD12322
IPIIPI00295525   IPI00104792   IPI00909699   IPI00107886   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3T3
IntAct (EBI)Q9H3T3
FunCoupENSG00000167680
BioGRIDSEMA6B
STRING (EMBL)SEMA6B
ZODIACSEMA6B
Ontologies - Pathways
QuickGOQ9H3T3
Ontology : AmiGOplasma membrane  nervous system development  integral component of membrane  cell differentiation  semaphorin receptor binding  
Ontology : EGO-EBIplasma membrane  nervous system development  integral component of membrane  cell differentiation  semaphorin receptor binding  
Pathways : KEGGAxon guidance   
NDEx NetworkSEMA6B
Atlas of Cancer Signalling NetworkSEMA6B
Wikipedia pathwaysSEMA6B
Orthology - Evolution
OrthoDB10501
GeneTree (enSembl)ENSG00000167680
Phylogenetic Trees/Animal Genes : TreeFamSEMA6B
HOVERGENQ9H3T3
HOGENOMQ9H3T3
Homologs : HomoloGeneSEMA6B
Homology/Alignments : Family Browser (UCSC)SEMA6B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEMA6B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEMA6B
dbVarSEMA6B
ClinVarSEMA6B
1000_GenomesSEMA6B 
Exome Variant ServerSEMA6B
ExAC (Exome Aggregation Consortium)SEMA6B (select the gene name)
Genetic variants : HAPMAP10501
Genomic Variants (DGV)SEMA6B [DGVbeta]
DECIPHERSEMA6B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEMA6B 
Mutations
ICGC Data PortalSEMA6B 
TCGA Data PortalSEMA6B 
Broad Tumor PortalSEMA6B
OASIS PortalSEMA6B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEMA6B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEMA6B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEMA6B
DgiDB (Drug Gene Interaction Database)SEMA6B
DoCM (Curated mutations)SEMA6B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEMA6B (select a term)
intoGenSEMA6B
Cancer3DSEMA6B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608873   
Orphanet
MedgenSEMA6B
Genetic Testing Registry SEMA6B
NextProtQ9H3T3 [Medical]
TSGene10501
GENETestsSEMA6B
Target ValidationSEMA6B
Huge Navigator SEMA6B [HugePedia]
snp3D : Map Gene to Disease10501
BioCentury BCIQSEMA6B
ClinGenSEMA6B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10501
Chemical/Pharm GKB GenePA35661
Clinical trialSEMA6B
Miscellaneous
canSAR (ICR)SEMA6B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEMA6B
EVEXSEMA6B
GoPubMedSEMA6B
iHOPSEMA6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:54:52 CEST 2017

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