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SEMA6C (semaphorin 6C)

Identity

Alias_namessema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
Alias_symbol (synonym)KIAA1869
Other aliasSEMAY
m-SemaY
m-SemaY2
HGNC (Hugo) SEMA6C
LocusID (NCBI) 10500
Atlas_Id 73114
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151131687 and ends at 151146664 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SEMA6C   10740
Cards
Entrez_Gene (NCBI)SEMA6C  10500  semaphorin 6C
AliasesSEMAY; m-SemaY; m-SemaY2
GeneCards (Weizmann)SEMA6C
Ensembl hg19 (Hinxton)ENSG00000143434 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143434 [Gene_View]  chr1:151131687-151146664 [Contig_View]  SEMA6C [Vega]
ICGC DataPortalENSG00000143434
TCGA cBioPortalSEMA6C
AceView (NCBI)SEMA6C
Genatlas (Paris)SEMA6C
WikiGenes10500
SOURCE (Princeton)SEMA6C
Genetics Home Reference (NIH)SEMA6C
Genomic and cartography
GoldenPath hg38 (UCSC)SEMA6C  -     chr1:151131687-151146664 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SEMA6C  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblSEMA6C - 1q21.3 [CytoView hg19]  SEMA6C - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBISEMA6C [Mapview hg19]  SEMA6C [Mapview hg38]
OMIM609294   
Gene and transcription
Genbank (Entrez)AB022434 AB058772 AF055020 AF339152 AF339153
RefSeq transcript (Entrez)NM_001178061 NM_001178062 NM_030913
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SEMA6C
Cluster EST : UnigeneHs.516316 [ NCBI ]
CGAP (NCI)Hs.516316
Alternative Splicing GalleryENSG00000143434
Gene ExpressionSEMA6C [ NCBI-GEO ]   SEMA6C [ EBI - ARRAY_EXPRESS ]   SEMA6C [ SEEK ]   SEMA6C [ MEM ]
Gene Expression Viewer (FireBrowse)SEMA6C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10500
GTEX Portal (Tissue expression)SEMA6C
Human Protein AtlasENSG00000143434-SEMA6C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3T2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3T2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3T2
Splice isoforms : SwissVarQ9H3T2
PhosPhoSitePlusQ9H3T2
Domaine pattern : Prosite (Expaxy)SEMA (PS51004)   
Domains : Interpro (EBI)Semap_dom    Semaphorin    Semaphorin_6C    WD40/YVTN_repeat-like_dom   
Domain families : Pfam (Sanger)Sema (PF01403)   
Domain families : Pfam (NCBI)pfam01403   
Domain families : Smart (EMBL)Sema (SM00630)  
Conserved Domain (NCBI)SEMA6C
DMDM Disease mutations10500
Blocks (Seattle)SEMA6C
SuperfamilyQ9H3T2
Human Protein Atlas [tissue]ENSG00000143434-SEMA6C [tissue]
Peptide AtlasQ9H3T2
HPRD10220
IPIIPI00023643   IPI00218450   IPI00218451   IPI00743398   IPI00746906   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3T2
IntAct (EBI)Q9H3T2
FunCoupENSG00000143434
BioGRIDSEMA6C
STRING (EMBL)SEMA6C
ZODIACSEMA6C
Ontologies - Pathways
QuickGOQ9H3T2
Ontology : AmiGOplasma membrane  axon guidance  integral component of membrane  
Ontology : EGO-EBIplasma membrane  axon guidance  integral component of membrane  
Pathways : KEGGAxon guidance   
NDEx NetworkSEMA6C
Atlas of Cancer Signalling NetworkSEMA6C
Wikipedia pathwaysSEMA6C
Orthology - Evolution
OrthoDB10500
GeneTree (enSembl)ENSG00000143434
Phylogenetic Trees/Animal Genes : TreeFamSEMA6C
HOVERGENQ9H3T2
HOGENOMQ9H3T2
Homologs : HomoloGeneSEMA6C
Homology/Alignments : Family Browser (UCSC)SEMA6C
Gene fusions - Rearrangements
Fusion: Tumor Portal SEMA6C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSEMA6C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SEMA6C
dbVarSEMA6C
ClinVarSEMA6C
1000_GenomesSEMA6C 
Exome Variant ServerSEMA6C
ExAC (Exome Aggregation Consortium)ENSG00000143434
GNOMAD BrowserENSG00000143434
Genetic variants : HAPMAP10500
Genomic Variants (DGV)SEMA6C [DGVbeta]
DECIPHERSEMA6C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSEMA6C 
Mutations
ICGC Data PortalSEMA6C 
TCGA Data PortalSEMA6C 
Broad Tumor PortalSEMA6C
OASIS PortalSEMA6C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSEMA6C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSEMA6C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SEMA6C
DgiDB (Drug Gene Interaction Database)SEMA6C
DoCM (Curated mutations)SEMA6C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SEMA6C (select a term)
intoGenSEMA6C
Cancer3DSEMA6C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609294   
Orphanet
MedgenSEMA6C
Genetic Testing Registry SEMA6C
NextProtQ9H3T2 [Medical]
TSGene10500
GENETestsSEMA6C
Target ValidationSEMA6C
Huge Navigator SEMA6C [HugePedia]
snp3D : Map Gene to Disease10500
BioCentury BCIQSEMA6C
ClinGenSEMA6C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10500
Chemical/Pharm GKB GenePA35662
Clinical trialSEMA6C
Miscellaneous
canSAR (ICR)SEMA6C (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSEMA6C
EVEXSEMA6C
GoPubMedSEMA6C
iHOPSEMA6C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:26:46 CET 2017

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